Index

_

__init__() (abtem.antialias.AntialiasAperture method) (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.EnsembleFromDistributions method) (abtem.distributions.MultidimensionalDistribution method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.integrals.FieldIntegrator method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.GaussianScatteringFactors method) (abtem.integrals.ProjectionIntegralTable method) (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.integrals.ScatteringFactorProjectionIntegrals method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.FresnelPropagator method) (abtem.multislice.MultisliceTransform method) (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWParametrization method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.BaseSMatrix method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesTransform method) (abtem.visualize.artists.AreaIndicator method) (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist1D method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.CircleAnnotations method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.OverlayImshowArtist method) (abtem.visualize.artists.ScaleBar method) (abtem.visualize.artists.ScaledCircleCollection method) (abtem.visualize.artists.ScatterArtist method) (abtem.visualize.axes_grid.AxesCollection method) (abtem.visualize.axes_grid.AxesGrid method) (abtem.visualize.visualizations.Visualization method) (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) (abtem.waves.BaseWaves method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method)

A

aberration_coefficients (abtem.transfer.Aberrations property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) aberrations (abtem.waves.Probe property) Aberrations (class in abtem.transfer) abs() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) abtem.antialias module abtem.array module abtem.atoms module abtem.detectors module abtem.distributions module abtem.inelastic.phonons module abtem.integrals module abtem.measurements module abtem.multislice module abtem.parametrizations module abtem.parametrizations.functions module abtem.parametrizations.functions.ewald module abtem.parametrizations.functions.kirkland module abtem.parametrizations.functions.lobato module abtem.parametrizations.functions.peng module abtem.potentials module abtem.potentials.charge_density module abtem.potentials.gpaw module abtem.potentials.iam module abtem.prism module abtem.prism.s_matrix module abtem.prism.utils module abtem.scan module abtem.tilt module abtem.transfer module abtem.transform module abtem.visualize module abtem.visualize.artists module abtem.visualize.axes_grid module abtem.visualize.visualizations module abtem.visualize.widgets module abtem.waves module accelerator (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) add_callback() (abtem.visualize.artists.ScaledCircleCollection method) add_class() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) add_margin() (abtem.scan.LineScan method) add_point_charges_fourier() (in module abtem.potentials.charge_density) add_to_axes() (abtem.scan.LineScan method) add_to_plot() (abtem.scan.GridScan method) add_traits() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) all_positions (abtem.measurements.IndexedDiffractionPatterns property) allocate_multislice_measurements() (in module abtem.multislice) angle (abtem.scan.LineScan property) angular_coordinates (abtem.measurements.DiffractionPatterns property) angular_extent (abtem.measurements.ReciprocalSpaceLineProfiles property) angular_limits (abtem.measurements.DiffractionPatterns property) angular_limits() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) angular_positions (abtem.measurements.IndexedDiffractionPatterns property) angular_sampling (abtem.measurements.DiffractionPatterns property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) angular_spread (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) AnnularDetector (class in abtem.detectors) antialias_aperture() (in module abtem.antialias) antialias_cutoff_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) antialias_valid_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

AntialiasAperture (class in abtem.antialias) aperture (abtem.waves.Probe property) Aperture (class in abtem.transfer) append() (abtem.array.ComputableList method) apply() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.multislice.MultisliceTransform method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesTransform method) apply_ctf() (abtem.waves.Waves method) apply_transform() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) AreaIndicator (class in abtem.visualize.artists) array (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) ArrayObject (class in abtem.array) ArrayObjectTransform (class in abtem.transform) Artist (class in abtem.visualize.artists) Artist1D (class in abtem.visualize.artists) Artist2D (class in abtem.visualize.artists) at_position() (abtem.scan.LineScan class method) atomic_numbers (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) atoms (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) atoms_in_cell() (in module abtem.atoms) AtomsEnsemble (class in abtem.inelastic.phonons) autoscale() (abtem.visualize.artists.ScaledCircleCollection method) autoscale_None() (abtem.visualize.artists.ScaledCircleCollection method) axes (abtem.visualize.artists.ScaledCircleCollection property) axes_metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) AxesCollection (class in abtem.visualize.axes_grid) AxesGrid (class in abtem.visualize.axes_grid) AxisAlignedBeamTilt (class in abtem.tilt) azimuthal_average() (abtem.measurements.DiffractionPatterns method) azimuthal_offset (abtem.measurements.PolarMeasurements property) azimuthal_sampling (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) (abtem.measurements.PolarMeasurements property)

B

bandlimit() (abtem.measurements.DiffractionPatterns method) base_axes_metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) base_dims (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) base_shape (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

base_tilt (abtem.waves.Waves property) BaseAperture (class in abtem.transfer) BaseBeamTilt (class in abtem.tilt) BaseDetector (class in abtem.detectors) BaseDistribution (class in abtem.distributions) BaseField (class in abtem.potentials.iam) BaseFrozenPhonons (class in abtem.inelastic.phonons) BaseGUI (class in abtem.visualize.widgets) BaseMeasurements (class in abtem.measurements) BasePotential (class in abtem.potentials.iam) BaseScan (class in abtem.scan) BaseSMatrix (class in abtem.prism.s_matrix) BaseTransferFunction (class in abtem.transfer) BaseWaves (class in abtem.waves) batch_crop_2d() (in module abtem.prism.utils) BeamTilt (class in abtem.tilt) best_orthogonal_cell() (in module abtem.atoms) block_direct() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.IndexedDiffractionPatterns method) blur() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) box (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) box_style (abtem.visualize.widgets.BaseGUI attribute) (abtem.visualize.widgets.ImageGUI attribute) (abtem.visualize.widgets.LinesGUI attribute) (abtem.visualize.widgets.ScatterGUI attribute) build() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.Potential method) (abtem.prism.s_matrix.SMatrix method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) Bullseye (class in abtem.transfer)

C

calculate_max_reciprocal_space_vector() (in module abtem.measurements) cartesian2polar() (in module abtem.transfer) cell (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) center_hole_cutoff (abtem.transfer.Zernike property) center_of_mass() (abtem.measurements.DiffractionPatterns method) changed() (abtem.visualize.artists.ScaledCircleCollection method) charge() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (abtem.potentials.gpaw.GPAWParametrization method) (in module abtem.parametrizations.functions.lobato) ChargeDensityPotential (class in abtem.potentials.charge_density) check_can_build() (abtem.waves.PlaneWave method) (abtem.waves.Probe method) children (abtem.visualize.widgets.BaseGUI attribute) (abtem.visualize.widgets.ImageGUI attribute) (abtem.visualize.widgets.LinesGUI attribute) (abtem.visualize.widgets.ScatterGUI attribute) CircleAnnotations (class in abtem.visualize.artists) class_own_trait_events() (abtem.visualize.widgets.BaseGUI class method) (abtem.visualize.widgets.ImageGUI class method) (abtem.visualize.widgets.LinesGUI class method) (abtem.visualize.widgets.ScatterGUI class method) class_own_traits() (abtem.visualize.widgets.BaseGUI class method) (abtem.visualize.widgets.ImageGUI class method) (abtem.visualize.widgets.LinesGUI class method) (abtem.visualize.widgets.ScatterGUI class method) class_trait_names() (abtem.visualize.widgets.BaseGUI class method) (abtem.visualize.widgets.ImageGUI class method) (abtem.visualize.widgets.LinesGUI class method) (abtem.visualize.widgets.ScatterGUI class method) class_traits() (abtem.visualize.widgets.BaseGUI class method) (abtem.visualize.widgets.ImageGUI class method) (abtem.visualize.widgets.LinesGUI class method) (abtem.visualize.widgets.ScatterGUI class method) clear() (abtem.array.ComputableList method) close() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) colorbar (abtem.visualize.artists.ScaledCircleCollection attribute) combine() (abtem.distributions.DistributionFromValues method) CompositeArrayObjectTransform (class in abtem.transform) ComputableList (class in abtem.array) compute() (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) concatenate() (in module abtem.array) conjugate (abtem.multislice.MultisliceTransform property) contains() (abtem.visualize.artists.ScaledCircleCollection method) conventional_multislice_step() (in module abtem.multislice) convert_complex() (in module abtem.visualize.visualizations) convert_xunits() (abtem.visualize.artists.ScaledCircleCollection method) convert_yunits() (abtem.visualize.artists.ScaledCircleCollection method) convolve() (abtem.waves.Waves method) coordinates (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) copy() (abtem.antialias.AntialiasAperture method) (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.EnsembleFromDistributions method) (abtem.distributions.MultidimensionalDistribution method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.integrals.FieldIntegrator method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.GaussianScatteringFactors method) (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.integrals.ScatteringFactorProjectionIntegrals method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method)

copy_to_device() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) count() (abtem.array.ComputableList method) crop() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) cross_validation_lock (abtem.visualize.widgets.BaseGUI property) (abtem.visualize.widgets.ImageGUI property) (abtem.visualize.widgets.LinesGUI property) (abtem.visualize.widgets.ScatterGUI property) crossover_angle (abtem.transfer.CTF property) CrystalPotential (class in abtem.potentials.iam) ctf (abtem.waves.Probe property) CTF (class in abtem.transfer) CustomScan (class in abtem.scan) cut_cell() (in module abtem.atoms) cutoff() (abtem.integrals.FieldIntegrator method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.GaussianScatteringFactors method) (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.integrals.ScatteringFactorProjectionIntegrals method) (in module abtem.integrals) cutoff_angles (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) cutoff_taper() (in module abtem.integrals) cutoff_tolerance (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.QuadratureProjectionIntegrals property)

D

decompose_affine_transform() (in module abtem.atoms) default_cbar_scalar_formatter() (in module abtem.visualize.artists) defocus (abtem.transfer.Aberrations property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) detect() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) detectors (abtem.multislice.MultisliceTransform property) device (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) differentials() (abtem.measurements.PolarMeasurements method) diffraction_patterns() (abtem.waves.Waves method) DiffractionPatterns (class in abtem.measurements) diffractograms() (abtem.measurements.Images method)

dimensions (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) direction (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) directions (abtem.inelastic.phonons.FrozenPhonons property) discrete_cmap() (in module abtem.visualize.visualizations) DistributionFromValues (class in abtem.distributions) distributions (abtem.distributions.MultidimensionalDistribution property) divide() (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.MultidimensionalDistribution method) DomainColoringArtist (class in abtem.visualize.artists) downsample (abtem.prism.s_matrix.SMatrix property) downsample() (abtem.waves.Waves method) downsampled_gpts (abtem.prism.s_matrix.SMatrix property) draw() (abtem.visualize.artists.ScaledCircleCollection method) dtype (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) dummy_probes() (abtem.prism.s_matrix.BaseSMatrix method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) DummyFrozenPhonons (class in abtem.inelastic.phonons)

E

EmptyTransform (class in abtem.transform) end (abtem.scan.GridScan property) (abtem.scan.LineScan property) endpoint (abtem.scan.GridScan property) (abtem.scan.LineScan property) energy (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) ensemble_axes_metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) ensemble_blocks() (abtem.array.ArrayObject method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.EnsembleFromDistributions method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) ensemble_dims (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property)

ensemble_mean (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) ensemble_shape (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) EnsembleFromDistributions (class in abtem.distributions) EnsembleTransform (class in abtem.transform) ensure_lazy() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) ensure_real_space() (abtem.waves.Waves method) ensure_reciprocal_space() (abtem.waves.Waves method) euler_sequence() (in module abtem.atoms) euler_to_rotation() (in module abtem.atoms) EwaldParametrization (class in abtem.parametrizations) exit_planes (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) exit_thicknesses (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) expand_dims() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) extend() (abtem.array.ComputableList method) extent (abtem.antialias.AntialiasAperture property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

F

fftshift (abtem.measurements.DiffractionPatterns property) FieldArray (class in abtem.potentials.iam) FieldIntegrator (class in abtem.integrals) findobj() (abtem.visualize.artists.ScaledCircleCollection method) finite (abtem.integrals.FieldIntegrator property) (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.GaussianScatteringFactors property) (abtem.integrals.QuadratureProjectionIntegrals property) (abtem.integrals.ScatteringFactorProjectionIntegrals property) finite_projected_potential() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) finite_projected_scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.peng) FlexibleAnnularDetector (class in abtem.detectors) flip_atoms() (in module abtem.atoms) flip_phase (abtem.transfer.CTF property) focal_spread (abtem.transfer.CTF property) (abtem.transfer.TemporalEnvelope property) focus() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) format_cursor_data() (abtem.visualize.artists.ScaledCircleCollection method) FresnelPropagator (class in abtem.multislice) from_array_and_metadata() (abtem.array.ArrayObject class method) (abtem.measurements.BaseMeasurements class method) (abtem.measurements.DiffractionPatterns class method) (abtem.measurements.Images class method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble class method) (abtem.measurements.PolarMeasurements class method) (abtem.measurements.RealSpaceLineProfiles class method) (abtem.measurements.ReciprocalSpaceLineProfiles class method) (abtem.potentials.iam.FieldArray class method) (abtem.potentials.iam.PotentialArray class method) (abtem.potentials.iam.TransmissionFunction class method) (abtem.prism.s_matrix.SMatrixArray class method) (abtem.waves.Waves class method)

from_values() (in module abtem.distributions) from_zarr() (abtem.array.ArrayObject class method) (abtem.measurements.BaseMeasurements class method) (abtem.measurements.DiffractionPatterns class method) (abtem.measurements.Images class method) (abtem.measurements.IndexedDiffractionPatterns class method) (abtem.measurements.MeasurementsEnsemble class method) (abtem.measurements.PolarMeasurements class method) (abtem.measurements.RealSpaceLineProfiles class method) (abtem.measurements.ReciprocalSpaceLineProfiles class method) (abtem.potentials.iam.FieldArray class method) (abtem.potentials.iam.PotentialArray class method) (abtem.potentials.iam.TransmissionFunction class method) (abtem.prism.s_matrix.SMatrixArray class method) (abtem.waves.Waves class method) (in module abtem.array) frozen_phonons (abtem.potentials.iam.Potential property) FrozenPhonons (class in abtem.inelastic.phonons) full_cutoff_angles (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

G

gaussian() (in module abtem.distributions) gaussian_charge() (in module abtem.parametrizations.functions.ewald) gaussian_filter() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) gaussian_parametrization (abtem.integrals.GaussianProjectionIntegrals property) gaussian_potential() (in module abtem.parametrizations.functions.ewald) gaussian_source_size() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) GaussianProjectionIntegrals (class in abtem.integrals) GaussianScatteringFactors (class in abtem.integrals) generate_blocks() (abtem.array.ArrayObject method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.EnsembleFromDistributions method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) generate_ensemble() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) generate_slices() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) get_aa() (abtem.visualize.artists.ScaledCircleCollection method) get_agg_filter() (abtem.visualize.artists.ScaledCircleCollection method) get_alpha() (abtem.visualize.artists.ScaledCircleCollection method) get_animated() (abtem.visualize.artists.ScaledCircleCollection method) get_antialiased() (abtem.visualize.artists.ScaledCircleCollection method) get_antialiaseds() (abtem.visualize.artists.ScaledCircleCollection method) get_array() (abtem.visualize.artists.ScaledCircleCollection method) get_capstyle() (abtem.visualize.artists.ScaledCircleCollection method) get_children() (abtem.visualize.artists.ScaledCircleCollection method) get_clim() (abtem.visualize.artists.ScaledCircleCollection method) get_clip_box() (abtem.visualize.artists.ScaledCircleCollection method) get_clip_on() (abtem.visualize.artists.ScaledCircleCollection method) get_clip_path() (abtem.visualize.artists.ScaledCircleCollection method) get_cmap() (abtem.visualize.artists.ScaledCircleCollection method) get_core_correction_interpolators() (in module abtem.potentials.gpaw) get_cursor_data() (abtem.visualize.artists.ScaledCircleCollection method) get_dashes() (abtem.visualize.artists.ScaledCircleCollection method) get_detector_region() (abtem.detectors.AnnularDetector method) get_detector_regions() (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.SegmentedDetector method) get_ec() (abtem.visualize.artists.ScaledCircleCollection method) get_edgecolors() (abtem.visualize.artists.ScaledCircleCollection method) get_extent() (in module abtem.visualize.artists) get_facecolors() (abtem.visualize.artists.ScaledCircleCollection method) get_fc() (abtem.visualize.artists.ScaledCircleCollection method) get_figure() (abtem.visualize.artists.ScaledCircleCollection method) get_fill() (abtem.visualize.artists.ScaledCircleCollection method) get_function() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method)

get_gid() (abtem.visualize.artists.ScaledCircleCollection method) get_hatch() (abtem.visualize.artists.ScaledCircleCollection method) get_in_layout() (abtem.visualize.artists.ScaledCircleCollection method) get_integral_table() (abtem.integrals.QuadratureProjectionIntegrals method) get_items() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) get_joinstyle() (abtem.visualize.artists.ScaledCircleCollection method) get_label() (abtem.visualize.artists.ScaledCircleCollection method) get_linestyles() (abtem.visualize.artists.ScaledCircleCollection method) get_linewidths() (abtem.visualize.artists.ScaledCircleCollection method) get_ls() (abtem.visualize.artists.ScaledCircleCollection method) get_lw() (abtem.visualize.artists.ScaledCircleCollection method) get_manager_state() (abtem.visualize.widgets.BaseGUI static method) (abtem.visualize.widgets.ImageGUI static method) (abtem.visualize.widgets.LinesGUI static method) (abtem.visualize.widgets.ScatterGUI static method) get_mouseover() (abtem.visualize.artists.ScaledCircleCollection method) get_offset_transform() (abtem.visualize.artists.ScaledCircleCollection method) get_offsets() (abtem.visualize.artists.ScaledCircleCollection method) get_picker() (abtem.visualize.artists.ScaledCircleCollection method) get_positions() (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) get_rasterized() (abtem.visualize.artists.ScaledCircleCollection method) get_sketch_params() (abtem.visualize.artists.ScaledCircleCollection method) get_sliced_atoms() (abtem.potentials.iam.Potential method) get_snap() (abtem.visualize.artists.ScaledCircleCollection method) get_state() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) get_tightbbox() (abtem.visualize.artists.ScaledCircleCollection method) get_transform() (abtem.visualize.artists.ScaledCircleCollection method) get_transformed_atoms() (abtem.potentials.iam.Potential method) get_transformed_clip_path_and_affine() (abtem.visualize.artists.ScaledCircleCollection method) get_transOffset() (abtem.visualize.artists.ScaledCircleCollection method) get_url() (abtem.visualize.artists.ScaledCircleCollection method) get_urls() (abtem.visualize.artists.ScaledCircleCollection method) get_visible() (abtem.visualize.artists.ScaledCircleCollection method) get_window_extent() (abtem.visualize.artists.ScaledCircleCollection method) get_zorder() (abtem.visualize.artists.ScaledCircleCollection method) GPAWParametrization (class in abtem.potentials.gpaw) GPAWPotential (class in abtem.potentials.gpaw) gpts (abtem.antialias.AntialiasAperture property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) grid (abtem.antialias.AntialiasAperture property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) GridScan (class in abtem.scan)

H

handle_comm_opened() (abtem.visualize.widgets.BaseGUI static method) (abtem.visualize.widgets.ImageGUI static method) (abtem.visualize.widgets.LinesGUI static method) (abtem.visualize.widgets.ScatterGUI static method) handle_control_comm_opened() (abtem.visualize.widgets.BaseGUI class method) (abtem.visualize.widgets.ImageGUI class method) (abtem.visualize.widgets.LinesGUI class method) (abtem.visualize.widgets.ScatterGUI class method) hard_aperture() (in module abtem.transfer) has_trait() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method)

have_units() (abtem.visualize.artists.ScaledCircleCollection method) hold_sync() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) hold_trait_notifications() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method)

I

imag() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.waves.Waves method) ImageArtist (class in abtem.visualize.artists) ImageGUI (class in abtem.visualize.widgets) Images (class in abtem.measurements) in_place (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ReciprocalSpaceMultiplication property) index() (abtem.array.ComputableList method) index_diffraction_spots() (abtem.measurements.DiffractionPatterns method) IndexedDiffractionPatterns (class in abtem.measurements) inner (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) insert() (abtem.array.ComputableList method) (abtem.transform.CompositeArrayObjectTransform method) integrate() (abtem.measurements.PolarMeasurements method) integrate_gradient() (abtem.measurements.Images method) integrate_gradient_fourier() (in module abtem.potentials.charge_density) integrate_on_grid() (abtem.integrals.FieldIntegrator method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.GaussianScatteringFactors method) (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.integrals.ScatteringFactorProjectionIntegrals method) integrate_radial() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) integrate_slice() (in module abtem.potentials.gpaw) integrated_center_of_mass() (abtem.measurements.DiffractionPatterns method) integration_step (abtem.integrals.QuadratureProjectionIntegrals property) integrator (abtem.potentials.iam.Potential property) intensities (abtem.measurements.IndexedDiffractionPatterns property) intensities_dict (abtem.measurements.IndexedDiffractionPatterns property) intensity() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.waves.Waves method)

interpolate() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) interpolate_line() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) interpolate_line_at_position() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) interpolate_radial_functions() (in module abtem.integrals) interpolation (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) is_cell_hexagonal() (in module abtem.atoms) is_cell_orthogonal() (in module abtem.atoms) is_cell_valid() (in module abtem.atoms) is_complex (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) is_lazy (abtem.array.ArrayObject property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.Waves property) is_transform_set() (abtem.visualize.artists.ScaledCircleCollection method)

K

keys (abtem.visualize.widgets.BaseGUI attribute) (abtem.visualize.widgets.ImageGUI attribute) (abtem.visualize.widgets.LinesGUI attribute) (abtem.visualize.widgets.ScatterGUI attribute)

KirklandParametrization (class in abtem.parametrizations)

L

limits (abtem.measurements.DiffractionPatterns property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) line_profiles() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method)

LinesArtist (class in abtem.visualize.artists) LineScan (class in abtem.scan) LinesGUI (class in abtem.visualize.widgets) LobatoParametrization (class in abtem.parametrizations)

M

make_toggle_hkl_button() (in module abtem.visualize.widgets) match_grid() (abtem.antialias.AntialiasAperture method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.BaseSMatrix method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.GridScan method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.waves.BaseWaves method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) match_probe() (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) max() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) max_angle (abtem.detectors.PixelatedDetector property) max_angles (abtem.measurements.DiffractionPatterns property) mean() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) MeasurementsEnsemble (class in abtem.measurements) merge_close_atoms() (in module abtem.atoms) metadata (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

miller_indices (abtem.measurements.IndexedDiffractionPatterns property) min() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) minimum_crop() (in module abtem.prism.utils) model_id (abtem.visualize.widgets.BaseGUI property) (abtem.visualize.widgets.ImageGUI property) (abtem.visualize.widgets.LinesGUI property) (abtem.visualize.widgets.ScatterGUI property) module abtem.antialias abtem.array abtem.atoms abtem.detectors abtem.distributions abtem.inelastic.phonons abtem.integrals abtem.measurements abtem.multislice abtem.parametrizations abtem.parametrizations.functions abtem.parametrizations.functions.ewald abtem.parametrizations.functions.kirkland abtem.parametrizations.functions.lobato abtem.parametrizations.functions.peng abtem.potentials abtem.potentials.charge_density abtem.potentials.gpaw abtem.potentials.iam abtem.prism abtem.prism.s_matrix abtem.prism.utils abtem.scan abtem.tilt abtem.transfer abtem.transform abtem.visualize abtem.visualize.artists abtem.visualize.axes_grid abtem.visualize.visualizations abtem.visualize.widgets abtem.waves mouseover (abtem.visualize.artists.ScaledCircleCollection property) move_item() (in module abtem.array) moveaxis() (in module abtem.array) MultidimensionalDistribution (class in abtem.distributions) multislice() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) multislice_and_detect() (in module abtem.multislice) MultisliceTransform (class in abtem.multislice)

N

nbins_azimuthal (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) nbins_radial (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) no_base_chunks() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) normalize (abtem.waves.PlaneWave property) normalize() (abtem.waves.Waves method) normalize_ensemble() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) normalize_to_spot() (abtem.measurements.IndexedDiffractionPatterns method) notify_change() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) num_configs (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) num_configurations (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property)

num_exit_planes (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) num_positions (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) num_rings (abtem.transfer.Bullseye property) num_slices (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) num_spokes (abtem.transfer.Bullseye property) nyquist_sampling (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) nyquist_sampling() (in module abtem.transfer)

O

observe() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) offset (abtem.detectors.AnnularDetector property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) on_msg() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) on_trait_change() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) on_widget_constructed() (abtem.visualize.widgets.BaseGUI static method) (abtem.visualize.widgets.ImageGUI static method) (abtem.visualize.widgets.LinesGUI static method) (abtem.visualize.widgets.ScatterGUI static method)

open() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) origin (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) orthogonalize_cell() (in module abtem.atoms) outer (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) outer_angle (abtem.measurements.PolarMeasurements property) OverlayImshowArtist (class in abtem.visualize.artists)

P

pad_atoms() (in module abtem.atoms) parametrization (abtem.integrals.QuadratureProjectionIntegrals property) Parametrization (class in abtem.parametrizations) pchanged() (abtem.visualize.artists.ScaledCircleCollection method) PengParametrization (class in abtem.parametrizations) periodic (abtem.integrals.FieldIntegrator property) (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.GaussianScatteringFactors property) (abtem.integrals.QuadratureProjectionIntegrals property) (abtem.integrals.ScatteringFactorProjectionIntegrals property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) (abtem.prism.s_matrix.SMatrixArray property) phase() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.waves.Waves method) phase_shift (abtem.transfer.Zernike property) phase_shift() (abtem.waves.Waves method) pick() (abtem.visualize.artists.ScaledCircleCollection method) pickable() (abtem.visualize.artists.ScaledCircleCollection method) PixelatedDetector (class in abtem.detectors) plane (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.Potential property) plane_to_axes() (in module abtem.atoms) plane_waves() (in module abtem.prism.utils) PlaneWave (class in abtem.waves) point_charge_potential() (in module abtem.parametrizations.functions.ewald) point_resolution (abtem.transfer.CTF property) point_resolution() (in module abtem.transfer) poisson_noise() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) polar2cartesian() (in module abtem.transfer) polar_binning() (abtem.measurements.DiffractionPatterns method) PolarMeasurements (class in abtem.measurements) pop() (abtem.array.ComputableList method)

positions (abtem.measurements.IndexedDiffractionPatterns property) (abtem.scan.CustomScan property) (abtem.waves.Probe property) positions_dict (abtem.measurements.IndexedDiffractionPatterns property) potential (abtem.multislice.MultisliceTransform property) (abtem.prism.s_matrix.SMatrix property) Potential (class in abtem.potentials.iam) potential() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.ewald) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) potential_derivative() (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) PotentialArray (class in abtem.potentials.iam) precession_tilts() (in module abtem.tilt) pretty_print_transform() (in module abtem.atoms) prism_coefficients() (in module abtem.prism.utils) prism_wave_vectors() (in module abtem.prism.utils) Probe (class in abtem.waves) profiles() (abtem.transfer.CTF method) (abtem.waves.Probe method) project() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) projected_potential() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) projected_scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) ProjectionIntegralTable (class in abtem.integrals) propagate() (abtem.multislice.FresnelPropagator method) properties() (abtem.visualize.artists.ScaledCircleCollection method)

Q

quad_order (abtem.integrals.QuadratureProjectionIntegrals property)

QuadratureProjectionIntegrals (class in abtem.integrals) quantum_number (abtem.transfer.Vortex property)

R

radial_binning() (abtem.measurements.DiffractionPatterns method) radial_offset (abtem.measurements.PolarMeasurements property) radial_sampling (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) (abtem.measurements.PolarMeasurements property) randomize() (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) real() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.waves.Waves method) RealSpaceLineProfiles (class in abtem.measurements) rechunk() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) reciprocal_lattice_vector_mask() (in module abtem.measurements) reciprocal_lattice_vectors (abtem.measurements.IndexedDiffractionPatterns property) reciprocal_space (abtem.detectors.PixelatedDetector property) (abtem.waves.Waves property) reciprocal_space_axes_metadata (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) reciprocal_space_sampling (abtem.antialias.AntialiasAperture property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

ReciprocalSpaceLineProfiles (class in abtem.measurements) ReciprocalSpaceMultiplication (class in abtem.transform) rectangle_cutoff_angles (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) reduce() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) reduce_ensemble() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) relative_difference() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) remove() (abtem.array.ComputableList method) (abtem.visualize.artists.ScaledCircleCollection method) remove_callback() (abtem.visualize.artists.ScaledCircleCollection method) remove_class() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) remove_low_intensity() (abtem.measurements.IndexedDiffractionPatterns method) resample (abtem.detectors.PixelatedDetector property) reverse() (abtem.array.ComputableList method) ring_width (abtem.transfer.Bullseye property) rotate_atoms() (in module abtem.atoms) rotate_atoms_to_plane() (in module abtem.atoms) rotation (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) rotation_matrix_from_plane() (in module abtem.atoms) rotation_matrix_to_euler() (in module abtem.atoms) round_gpts_to_interpolation() (abtem.prism.s_matrix.SMatrix method)

S

sampling (abtem.antialias.AntialiasAperture property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) ScaleBar (class in abtem.visualize.artists) scaled_parameters() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) ScaledCircleCollection (class in abtem.visualize.artists) scan() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Probe method) (abtem.waves.Waves method) scan_noise() (abtem.measurements.Images method) ScatterArtist (class in abtem.visualize.artists) ScatterGUI (class in abtem.visualize.widgets) scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) (in module abtem.parametrizations.functions.peng) scattering_factor_k2() (in module abtem.parametrizations.functions.peng) scattering_factors (abtem.integrals.ScatteringFactorProjectionIntegrals property) ScatteringFactorProjectionIntegrals (class in abtem.integrals) scherzer_defocus (abtem.transfer.CTF property) scherzer_defocus() (in module abtem.transfer) seed (abtem.inelastic.phonons.FrozenPhonons property) SegmentedDetector (class in abtem.detectors) select_block() (abtem.array.ArrayObject method) (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SegmentedDetector method) (abtem.detectors.WavesDetector method) (abtem.distributions.EnsembleFromDistributions method) (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.FrozenPhonons method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.multislice.MultisliceTransform method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) (abtem.tilt.AxisAlignedBeamTilt method) (abtem.tilt.BaseBeamTilt method) (abtem.tilt.BeamTilt method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.CompositeArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.EnsembleTransform method) (abtem.transform.ReciprocalSpaceMultiplication method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesTransform method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) semiangle_cutoff (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.Probe property) send() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) send_state() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) set() (abtem.visualize.artists.ScaledCircleCollection method) set_aa() (abtem.visualize.artists.ScaledCircleCollection method) set_aberrations() (abtem.transfer.Aberrations method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) set_agg_filter() (abtem.visualize.artists.ScaledCircleCollection method) set_alpha() (abtem.visualize.artists.ScaledCircleCollection method) set_animated() (abtem.visualize.artists.ScaledCircleCollection method) set_antialiased() (abtem.visualize.artists.ScaledCircleCollection method) set_antialiaseds() (abtem.visualize.artists.ScaledCircleCollection method) set_array() (abtem.visualize.artists.ScaledCircleCollection method) set_capstyle() (abtem.visualize.artists.ScaledCircleCollection method) set_clim() (abtem.visualize.artists.ScaledCircleCollection method) set_clip_box() (abtem.visualize.artists.ScaledCircleCollection method) set_clip_on() (abtem.visualize.artists.ScaledCircleCollection method) set_clip_path() (abtem.visualize.artists.ScaledCircleCollection method) set_cmap() (abtem.visualize.artists.ScaledCircleCollection method) set_color() (abtem.visualize.artists.ScaledCircleCollection method) set_dashes() (abtem.visualize.artists.ScaledCircleCollection method) set_ec() (abtem.visualize.artists.ScaledCircleCollection method) set_edgecolor() (abtem.visualize.artists.ScaledCircleCollection method) set_edgecolors() (abtem.visualize.artists.ScaledCircleCollection method) set_ensemble_axes_metadata() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) set_facecolor() (abtem.visualize.artists.ScaledCircleCollection method) set_facecolors() (abtem.visualize.artists.ScaledCircleCollection method) set_fc() (abtem.visualize.artists.ScaledCircleCollection method) set_figure() (abtem.visualize.artists.ScaledCircleCollection method) set_gid() (abtem.visualize.artists.ScaledCircleCollection method) set_hatch() (abtem.visualize.artists.ScaledCircleCollection method) set_in_layout() (abtem.visualize.artists.ScaledCircleCollection method) set_joinstyle() (abtem.visualize.artists.ScaledCircleCollection method) set_label() (abtem.visualize.artists.ScaledCircleCollection method) set_linestyle() (abtem.visualize.artists.ScaledCircleCollection method) set_linestyles() (abtem.visualize.artists.ScaledCircleCollection method) set_linewidth() (abtem.visualize.artists.ScaledCircleCollection method) set_linewidths() (abtem.visualize.artists.ScaledCircleCollection method) set_ls() (abtem.visualize.artists.ScaledCircleCollection method) set_lw() (abtem.visualize.artists.ScaledCircleCollection method) set_mouseover() (abtem.visualize.artists.ScaledCircleCollection method) set_norm() (abtem.visualize.artists.ScaledCircleCollection method) set_offset_transform() (abtem.visualize.artists.ScaledCircleCollection method) set_offsets() (abtem.visualize.artists.ScaledCircleCollection method) set_path_effects() (abtem.visualize.artists.ScaledCircleCollection method) set_picker() (abtem.visualize.artists.ScaledCircleCollection method)

set_pickradius() (abtem.visualize.artists.ScaledCircleCollection method) set_rasterized() (abtem.visualize.artists.ScaledCircleCollection method) set_sketch_params() (abtem.visualize.artists.ScaledCircleCollection method) set_snap() (abtem.visualize.artists.ScaledCircleCollection method) set_state() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) set_trait() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) set_transform() (abtem.visualize.artists.ScaledCircleCollection method) set_transOffset() (abtem.visualize.artists.ScaledCircleCollection method) set_url() (abtem.visualize.artists.ScaledCircleCollection method) set_urls() (abtem.visualize.artists.ScaledCircleCollection method) set_visible() (abtem.visualize.artists.ScaledCircleCollection method) set_zorder() (abtem.visualize.artists.ScaledCircleCollection method) setup_instance() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) shape (abtem.array.ArrayObject property) (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.EnsembleFromDistributions property) (abtem.distributions.MultidimensionalDistribution property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BaseBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.CompositeArrayObjectTransform property) (abtem.transform.EmptyTransform property) (abtem.transform.EnsembleTransform property) (abtem.transform.ReciprocalSpaceMultiplication property) (abtem.transform.TransformFromFunc property) (abtem.transform.WavesTransform property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) show() (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.SegmentedDetector method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.waves.Probe method) (abtem.waves.Waves method) show_atoms() (in module abtem.visualize.visualizations) shrink_cell() (in module abtem.atoms) sigmas (abtem.inelastic.phonons.FrozenPhonons property) (abtem.parametrizations.EwaldParametrization property) (abtem.parametrizations.KirklandParametrization property) (abtem.parametrizations.LobatoParametrization property) (abtem.parametrizations.Parametrization property) (abtem.parametrizations.PengParametrization property) sinc() (in module abtem.integrals) slice_limits (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) slice_thickness (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) slider_from_axes_metadata() (in module abtem.visualize.widgets) SMatrix (class in abtem.prism.s_matrix) SMatrixArray (class in abtem.prism.s_matrix) soft (abtem.transfer.Aperture property) (abtem.transfer.CTF property) (abtem.waves.Probe property) soft_aperture() (in module abtem.transfer) sort() (abtem.array.ComputableList method) (abtem.measurements.IndexedDiffractionPatterns method) SpatialEnvelope (class in abtem.transfer) spoke_width (abtem.transfer.Bullseye property) squeeze() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) stack() (in module abtem.array) stale (abtem.visualize.artists.ScaledCircleCollection property) standard_deviations() (abtem.inelastic.phonons.AtomsEnsemble method) standardize_cell() (in module abtem.atoms) start (abtem.scan.GridScan property) (abtem.scan.LineScan property) std() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) step_size (abtem.detectors.FlexibleAnnularDetector property) sticky_edges (abtem.visualize.artists.ScaledCircleCollection property) storage_device (abtem.prism.s_matrix.SMatrixArray property) store_on_host (abtem.prism.s_matrix.SMatrix property) sum() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) superpose_deltas() (in module abtem.integrals) swapaxes() (in module abtem.array)

T

tabbable (abtem.visualize.widgets.BaseGUI attribute) (abtem.visualize.widgets.ImageGUI attribute) (abtem.visualize.widgets.LinesGUI attribute) (abtem.visualize.widgets.ScatterGUI attribute) TemporalEnvelope (class in abtem.transfer) thickness (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) (abtem.potentials.iam.Potential property) (abtem.potentials.iam.PotentialArray property) (abtem.potentials.iam.TransmissionFunction property) tile() (abtem.measurements.Images method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.waves.Waves method) tile_scan() (abtem.measurements.DiffractionPatterns method) tilt (abtem.prism.s_matrix.SMatrix property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) to_atoms_ensemble() (abtem.inelastic.phonons.FrozenPhonons method) to_cpu (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property) to_cpu() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_data_array() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_dataframe() (abtem.measurements.IndexedDiffractionPatterns method) to_diffraction_patterns() (abtem.measurements.PolarMeasurements method) (abtem.transfer.Aberrations method) (abtem.transfer.Aperture method) (abtem.transfer.BaseAperture method) (abtem.transfer.BaseTransferFunction method) (abtem.transfer.Bullseye method) (abtem.transfer.CTF method) (abtem.transfer.SpatialEnvelope method) (abtem.transfer.TemporalEnvelope method) (abtem.transfer.Vortex method) (abtem.transfer.Zernike method) to_gpu() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_hyperspy() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method)

to_image_ensemble() (abtem.measurements.PolarMeasurements method) to_images() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.BasePotential method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.Potential method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.waves.Waves method) to_rgba() (abtem.visualize.artists.ScaledCircleCollection method) to_tiff() (abtem.array.ArrayObject method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) to_zarr() (abtem.array.ArrayObject method) (abtem.array.ComputableList method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.PolarMeasurements method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves method) tooltip (abtem.visualize.widgets.BaseGUI attribute) (abtem.visualize.widgets.ImageGUI attribute) (abtem.visualize.widgets.LinesGUI attribute) (abtem.visualize.widgets.ScatterGUI attribute) trait_defaults() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) trait_events() (abtem.visualize.widgets.BaseGUI class method) (abtem.visualize.widgets.ImageGUI class method) (abtem.visualize.widgets.LinesGUI class method) (abtem.visualize.widgets.ScatterGUI class method) trait_has_value() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) trait_metadata() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) trait_names() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) trait_values() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) traits() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) trajectory (abtem.inelastic.phonons.AtomsEnsemble property) TransformFromFunc (class in abtem.transform) transforms (abtem.transform.CompositeArrayObjectTransform property) transition_potential_multislice_and_detect() (in module abtem.multislice) transition_potential_scan() (abtem.waves.Probe method) transmission_function() (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) TransmissionFunction (class in abtem.potentials.iam) transmit() (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) transpose (abtem.multislice.MultisliceTransform property)

U

uniform() (in module abtem.distributions) unobserve() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) unobserve_all() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method)

update() (abtem.visualize.artists.ScaledCircleCollection method) update_from() (abtem.visualize.artists.ScaledCircleCollection method) update_scalarmappable() (abtem.visualize.artists.ScaledCircleCollection method) url (abtem.detectors.AnnularDetector property) (abtem.detectors.BaseDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.PixelatedDetector property) (abtem.detectors.SegmentedDetector property) (abtem.detectors.WavesDetector property)

V

validate_cmap() (in module abtem.visualize.artists) validate_distribution() (in module abtem.distributions) validate_parameters() (in module abtem.parametrizations) validate_parametrization() (in module abtem.parametrizations) validate_sigmas() (in module abtem.parametrizations)

values (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) Visualization (class in abtem.visualize.visualizations) Vortex (class in abtem.transfer)

W

wave_vectors (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) wavelength (abtem.potentials.iam.TransmissionFunction property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.BaseTransferFunction property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property)

waves (abtem.prism.s_matrix.SMatrixArray property) Waves (class in abtem.waves) WavesDetector (class in abtem.detectors) WavesTransform (class in abtem.transform) weights (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) width() (abtem.measurements.RealSpaceLineProfiles method) (abtem.measurements.ReciprocalSpaceLineProfiles method) wiener_snr (abtem.transfer.CTF property) window_extent (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) window_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) window_offset (abtem.prism.s_matrix.SMatrixArray property) wrap_with_tolerance() (in module abtem.atoms) wrapped_crop_2d() (in module abtem.prism.utils) wrapped_slices() (in module abtem.prism.utils)

X

x_ray_scattering_factor() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) (in module abtem.parametrizations.functions.lobato)

Z

Zernike (class in abtem.transfer)