Index

A

aberrations (abtem.waves.Probe property) Aberrations (class in abtem.transfer) abs() (abtem.measurements.BaseMeasurements method) abs2() (in module abtem.core.complex) absolute_threshold() (abtem.inelastic.core_loss.TransitionPotentialArray method) abtem module abtem.antialias module abtem.array module abtem.atoms module abtem.bloch module abtem.bloch.dynamical module abtem.bloch.indexing module abtem.bloch.matrix_exponential module abtem.bloch.utils module abtem.core module abtem.core.axes module abtem.core.backend module abtem.core.chunks module abtem.core.colors module abtem.core.complex module abtem.core.config module abtem.core.constants module abtem.core.diagnostics module abtem.core.electron_configurations module abtem.core.energy module abtem.core.ensemble module abtem.core.fft module abtem.core.grid module abtem.core.units module abtem.core.utils module abtem.detectors module abtem.distributions module abtem.finite_difference module abtem.inelastic module abtem.inelastic.core_loss module abtem.inelastic.phonons module abtem.inelastic.plasmons module abtem.integrals module abtem.magnetism module abtem.magnetism.gpaw module abtem.magnetism.iam module abtem.magnetism.parametrizations module abtem.magnetism.pauli module abtem.magnetism.utils module abtem.mcf module abtem.measurements module abtem.mtf module abtem.multislice module abtem.noise module abtem.parametrizations module abtem.parametrizations.functions module abtem.parametrizations.functions.ewald module abtem.parametrizations.functions.kirkland module abtem.parametrizations.functions.lobato module abtem.parametrizations.functions.peng module abtem.potentials module abtem.potentials.charge_density module abtem.potentials.gpaw module abtem.potentials.iam module abtem.prism module abtem.prism.s_matrix module abtem.prism.utils module abtem.scan module abtem.slicing module abtem.tilt module abtem.transfer module abtem.transform module abtem.visualize module abtem.visualize.artists module abtem.visualize.axes_grid module abtem.visualize.visualizations module abtem.visualize.widgets module abtem.waves module

accelerator (abtem.core.energy.HasAcceleratorMixin property) Accelerator (class in abtem.core.energy) add_area_indicator() (abtem.visualize.artists.Artist2D method) add_margin() (abtem.scan.LineScan method) add_point_charges_fourier() (in module abtem.potentials.charge_density) add_to_axes() (abtem.scan.LineScan method) add_to_plot() (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) adjust_coordinate_limits_to_artists() (abtem.visualize.visualizations.Visualization method) adjust_coulomb_potential() (abtem.magnetism.iam.VectorPotentialArray method) adjust_figure_to_bbox() (abtem.visualize.axes_grid.AxesGrid method) adjusted_gpts() (in module abtem.core.grid) all_positions (abtem.measurements.IndexedDiffractionPatterns property) all_positions_have_relative_periodic_pair() (in module abtem.bloch.utils) allocate_measurement() (in module abtem.multislice) allocate_multislice_measurements() (in module abtem.multislice) allowed_chars() (in module abtem.bloch.dynamical) AllowedRotations (in module abtem.bloch.dynamical) amplitude_axes_image (abtem.visualize.artists.DomainColoringArtist property) amplitude_norm (abtem.visualize.artists.DomainColoringArtist property) angle (abtem.detectors.SpectralSlitDetector property) (abtem.scan.LineScan property) angular_coordinates (abtem.measurements.DiffractionPatterns property) angular_extent (abtem.measurements.ReciprocalSpaceLineProfiles property) angular_limits (abtem.measurements.DiffractionPatterns property) angular_limits() (abtem.detectors.AnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SpectralSlitDetector method) (abtem.detectors.WavesDetector method) angular_positions (abtem.measurements.IndexedDiffractionPatterns property) angular_sampling (abtem.measurements.DiffractionPatterns property) (abtem.transfer.BaseTransferFunction property) (abtem.waves.BaseWaves property) (abtem.waves.Waves property) angular_spread (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) annotations (abtem.visualize.artists.ScatterArtist property) annotations_slider (abtem.visualize.widgets.ScatterGUI property) AnnularAperture (class in abtem.transfer) AnnularDetector (class in abtem.detectors) antialias_aperture() (in module abtem.antialias) antialias_cutoff_gpts (abtem.waves.BaseWaves property) antialias_valid_gpts (abtem.waves.BaseWaves property) AntialiasAperture (class in abtem.antialias) antialiased_disk() (in module abtem.bloch.indexing) aperture (abtem.waves.Probe property) Aperture (class in abtem.transfer) apply() (abtem.detectors.BaseDetector method) (abtem.finite_difference.LaplaceOperator method) (abtem.inelastic.plasmons.PlasmonScatteringEvents method) (abtem.multislice.MultisliceTransform method) (abtem.noise.NoiseTransform method) (abtem.noise.ScanNoiseTransform method) (abtem.tilt.BaseBeamTilt method) (abtem.transform.ArrayObjectTransform method) (abtem.transform.EmptyTransform method) (abtem.transform.TransformFromFunc method) (abtem.transform.WavesToMeasurementTransform method) (abtem.transform.WavesToWavesTransform method) (abtem.transform.WavesTransform method) apply_A_xy_dot_nabla_xy() (in module abtem.magnetism.pauli) apply_ctf() (abtem.waves.Waves method) apply_func() (abtem.array.ArrayObject method) apply_transform() (abtem.array.ArrayObject method) (abtem.waves.WavesBuilder method) are_vectors_orthogonal() (in module abtem.bloch.utils) AreaIndicator (class in abtem.visualize.artists) array (abtem.array.ArrayObject property) array_row_intersection() (in module abtem.core.utils) ArrayItemType (in module abtem.array) ArrayModule (in module abtem.core.backend) ArrayObject (class in abtem.array) ArrayObjectTransform (class in abtem.transform) ArrayObjectType (in module abtem.array) ArrayObjectTypeAlt (in module abtem.array) Artist (class in abtem.visualize.artists) Artist1D (class in abtem.visualize.artists) Artist2D (class in abtem.visualize.artists) artists (abtem.visualize.visualizations.Visualization property) asnumpy() (in module abtem.core.backend) assert_chunks_match_shape() (in module abtem.core.chunks) at_position() (abtem.scan.LineScan class method) atom_property_dict_to_atom_property_array() (in module abtem.atoms) atomic_magnetic_field_3d() (in module abtem.magnetism.iam) atomic_numbers (abtem.inelastic.phonons.BaseFrozenPhonons property) atomic_vector_potential_3d() (in module abtem.magnetism.iam) AtomicWaveFunction (class in abtem.inelastic.core_loss) AtomProperties (in module abtem.atoms) atoms (abtem.bloch.dynamical.StructureFactor property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.magnetism.gpaw.GPAW property) (abtem.slicing.BaseSlicedAtoms property) atoms_in_cell() (in module abtem.atoms) AtomsEnsemble (class in abtem.inelastic.phonons) attach_visualization() (abtem.visualize.widgets.BaseGUI method) (abtem.visualize.widgets.ImageGUI method) (abtem.visualize.widgets.LinesGUI method) (abtem.visualize.widgets.ScatterGUI method) aufbau() (in module abtem.core.electron_configurations) auto_detect_centering() (in module abtem.bloch.utils) autoscale (abtem.visualize.visualizations.Visualization property) autoscale_button (abtem.visualize.widgets.BaseGUI property) axes (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.visualize.axes_grid.AxesCollection property) (abtem.visualize.axes_grid.AxesGrid property) (abtem.visualize.visualizations.Visualization property) axes_image (abtem.visualize.artists.ImageArtist property) axes_metadata (abtem.array.ArrayObject property) (abtem.core.ensemble.Ensemble property) (abtem.waves.WavesBuilder property) AxesCollection (class in abtem.visualize.axes_grid) AxesGrid (class in abtem.visualize.axes_grid) AxesMetadataList (class in abtem.core.axes) axis() (abtem.visualize.visualizations.Visualization method) axis_from_dict() (in module abtem.core.axes) axis_location_to_indices() (abtem.visualize.axes_grid.AxesGrid method) axis_mapping (in module abtem.atoms) axis_off() (abtem.visualize.visualizations.Visualization method) axis_to_dict() (in module abtem.core.axes) AxisAlignedBeamTilt (class in abtem.tilt) AxisAlignedTiltAxis (class in abtem.core.axes) AxisMetadata (class in abtem.core.axes) azimuthal_angles (abtem.inelastic.plasmons.PlasmonAxis property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property) azimuthal_average() (abtem.measurements.DiffractionPatterns method) azimuthal_letter (in module abtem.core.electron_configurations) (in module abtem.inelastic.core_loss) azimuthal_number (in module abtem.core.electron_configurations) (in module abtem.inelastic.core_loss) azimuthal_offset (abtem.measurements.PolarMeasurements property) azimuthal_sampling (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) (abtem.measurements.PolarMeasurements property)

B

b (in module abtem.bloch.matrix_exponential) B_to_sigma() (in module abtem.atoms) bandlimit() (abtem.antialias.AntialiasAperture method) (abtem.measurements.DiffractionPatterns method) base_axes_metadata (abtem.array.ArrayObject property) (abtem.core.ensemble.Ensemble property) (abtem.magnetism.iam.BaseMagneticField property) (abtem.magnetism.iam.BaseVectorPotential property) (abtem.measurements.BaseMeasurements property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.measurements.MeasurementsEnsemble property) (abtem.measurements.MomentumResolvedSpectrum property) (abtem.measurements.PolarMeasurements property) (abtem.measurements.RealSpaceLineProfiles property) (abtem.measurements.ReciprocalSpaceLineProfiles property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.BasePotential property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.waves.BaseWaves property) base_dims (abtem.array.ArrayObject property) base_shape (abtem.array.ArrayObject property) (abtem.core.ensemble.Ensemble property) (abtem.magnetism.iam.BaseMagneticField property) (abtem.magnetism.iam.BaseVectorPotential property) (abtem.potentials.iam.BaseField property) (abtem.prism.s_matrix.SMatrix property) (abtem.waves.WavesBuilder property) base_tilt (abtem.waves.Waves property) BaseAperture (class in abtem.transfer) BaseBeamTilt (class in abtem.tilt) BaseDetector (class in abtem.detectors) BaseDistribution (class in abtem.distributions) BaseField (class in abtem.potentials.iam) BaseFrozenPhonons (class in abtem.inelastic.phonons) BaseGUI (class in abtem.visualize.widgets)

BaseMagneticField (class in abtem.magnetism.iam) BaseMeasurements (class in abtem.measurements) BaseMeasurementsSubclass (in module abtem.measurements) BasePotential (class in abtem.potentials.iam) BaseScan (class in abtem.scan) BaseSlicedAtoms (class in abtem.slicing) BaseSMatrix (class in abtem.prism.s_matrix) BaseStructureFactor (class in abtem.bloch.dynamical) BaseTransferFunction (class in abtem.transfer) BaseTransitionCollection (class in abtem.inelastic.core_loss) BaseTransitionPotential (class in abtem.inelastic.core_loss) BaseVectorPotential (class in abtem.magnetism.iam) BaseWaves (class in abtem.waves) batch_crop_2d() (in module abtem.prism.utils) BeamTilt (class in abtem.tilt) BeamTilt2D (class in abtem.tilt) best_orthogonal_cell() (in module abtem.atoms) bilinear_weighted_sum() (in module abtem.magnetism.iam) blend_angle (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) BlochwaveEnsemble (class in abtem.bloch.dynamical) BlochWaves (class in abtem.bloch.dynamical) block_direct() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.IndexedDiffractionPatterns method) bohr_magneton (in module abtem.magnetism.utils) bound (abtem.inelastic.core_loss.AtomicWaveFunction property) (abtem.inelastic.core_loss.RadialWavefunction property) bound_configuration (abtem.inelastic.core_loss.SubshellTransitions property) box (abtem.slicing.BaseSlicedAtoms property) build() (abtem.bloch.dynamical.StructureFactor method) (abtem.inelastic.core_loss.TransitionPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.FieldArray method) (abtem.prism.s_matrix.SMatrix method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.WavesBuilder method) Bullseye (class in abtem.transfer)

C

CachedFFTWConvolution (class in abtem.core.fft) calculate_bound_radial_wavefunction() (in module abtem.inelastic.core_loss) calculate_constant_magnetic_field() (in module abtem.magnetism.gpaw) calculate_continuum_radial_wavefunction() (in module abtem.inelastic.core_loss) calculate_diffraction_patterns() (abtem.bloch.dynamical.BlochwaveEnsemble method) (abtem.bloch.dynamical.BlochWaves method) calculate_dynamical_scattering() (in module abtem.bloch.dynamical) calculate_exit_waves() (abtem.bloch.dynamical.BlochwaveEnsemble method) (abtem.bloch.dynamical.BlochWaves method) calculate_g_vec() (in module abtem.bloch.utils) calculate_g_vec_length() (in module abtem.bloch.utils) calculate_M_matrix() (in module abtem.bloch.dynamical) calculate_magnetic_vector_potential() (in module abtem.magnetism.gpaw) calculate_max_reciprocal_space_vector() (in module abtem.measurements) calculate_scattering_factors() (abtem.bloch.dynamical.StructureFactor method) (in module abtem.bloch.dynamical) calculate_scattering_matrix() (abtem.bloch.dynamical.BlochWaves method) (in module abtem.bloch.dynamical) calculate_structure_factors() (in module abtem.bloch.dynamical) calculate_structure_matrix() (abtem.bloch.dynamical.BlochWaves method) (in module abtem.bloch.dynamical) calculate_wave_functions() (in module abtem.bloch.dynamical) calculators (abtem.potentials.gpaw.GPAWPotential property) cartesian2polar() (in module abtem.transfer) cartesian2polar_3d() (in module abtem.magnetism.iam) categories (in module abtem.core.axes) cell (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochWaves property) (abtem.bloch.dynamical.StructureFactor property) (abtem.bloch.dynamical.StructureFactorArray property) (abtem.inelastic.phonons.BaseFrozenPhonons property) cell_bounds() (in module abtem.bloch.utils) center_hole_cutoff (abtem.transfer.Zernike property) center_of_mass() (abtem.measurements.DiffractionPatterns method) centering (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochwaveEnsemble property) central_difference_gradient_cbc() (in module abtem.magnetism.pauli) central_difference_gradient_pbc() (in module abtem.magnetism.pauli) characteristic_angle() (abtem.inelastic.plasmons.MonteCarloPlasmons method) charge() (abtem.parametrizations.Parametrization method) (abtem.potentials.gpaw.GPAWParametrization method) (in module abtem.parametrizations.functions.lobato) charge_density (abtem.potentials.charge_density.ChargeDensityPotential property) ChargeDensityPotential (class in abtem.potentials.charge_density) check_can_build() (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.WavesBuilder method) check_chunks_match_shape_length() (in module abtem.core.chunks) check_cupy_is_installed() (in module abtem.core.backend) check_deprecations() (in module abtem.core.config) check_is_defined() (abtem.core.energy.Accelerator method) (abtem.core.grid.Grid method) check_match() (abtem.core.energy.Accelerator method) (abtem.core.grid.Grid method) check_orthogonality() (in module abtem.bloch.utils) check_slice_idx() (abtem.slicing.BaseSlicedAtoms method) check_valid_quantum_number() (in module abtem.inelastic.core_loss) chunk_ranges() (in module abtem.core.chunks) Chunks (in module abtem.core.chunks) ChunksTuple (in module abtem.core.chunks) circle_collection (abtem.visualize.artists.ScatterArtist property) CircleAnnotations (class in abtem.visualize.artists) close_if_exists() (abtem.core.diagnostics.TqdmWrapper method) cmap_dropdown (abtem.visualize.widgets.ImageGUI property) (abtem.visualize.widgets.ScatterGUI property) combine() (abtem.distributions.DistributionFromValues method) combined_potential() (abtem.magnetism.gpaw.GPAWMagneticFields method) commensurate() (abtem.scan.GridScan class method) commensurate_gpts() (in module abtem.slicing)

commensurate_slice_thickness() (in module abtem.slicing) common_scale_button (abtem.visualize.widgets.BaseGUI property) complex_dropdown (abtem.visualize.widgets.ImageGUI property) (abtem.visualize.widgets.LinesGUI property) complex_exponential() (in module abtem.core.complex) complex_exponential_scaled() (in module abtem.core.complex) complex_labels (in module abtem.core.axes) CompressedSMatrixArray (class in abtem.prism.s_matrix) ComputableList (class in abtem.array) compute() (abtem.array.ArrayObject method) (abtem.array.ComputableList method) concatenate() (abtem.core.axes.AxisMetadata method) (abtem.core.axes.OrdinalAxis method) (in module abtem.array) concatenate_array_blocks() (in module abtem.core.ensemble) config (abtem.core.config.set attribute) (in module abtem.core.config) config_lock (in module abtem.core.config) config_str_to_config_tuples() (in module abtem.core.electron_configurations) (in module abtem.inelastic.core_loss) config_tuples_to_config_str() (in module abtem.core.electron_configurations) (in module abtem.inelastic.core_loss) conjugate (abtem.multislice.FourierMultislice attribute) conventional_multislice_step() (in module abtem.multislice) conventional_operator() (in module abtem.finite_difference) convert_complex() (in module abtem.visualize.visualizations) convert_units() (abtem.core.axes.LinearAxis method) convolve() (abtem.waves.Waves method) coordinate_grid() (in module abtem.core.grid) coordinates (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) coordinates() (abtem.core.axes.AxisMetadata method) (abtem.core.axes.LinearAxis method) (abtem.core.axes.OrdinalAxis method) copy() (abtem.core.axes.AxisMetadata method) (abtem.core.utils.CopyMixin method) (abtem.mcf.DiagonalMCF method) copy_to_device() (abtem.array.ArrayObject method) (abtem.prism.s_matrix.SMatrixArray method) (in module abtem.core.backend) CopyMixin (class in abtem.core.utils) corner_radius (abtem.transfer.Bullseye property) corners (abtem.detectors.SpectralSlitDetector property) correction_parametrization (abtem.integrals.GaussianProjectionIntegrals property) correction_projected_scattering_factors() (in module abtem.integrals) cos_sin_deg() (in module abtem.core.utils) create_ellipse() (in module abtem.bloch.indexing) crop() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MomentumResolvedSpectrum method) crossover_angle (abtem.transfer.CTF property) crystal_slice_thicknesses() (in module abtem.slicing) CrystalPotential (class in abtem.potentials.iam) ctf (abtem.waves.Probe property) CTF (class in abtem.transfer) curl_fourier() (in module abtem.potentials.charge_density) CustomScan (class in abtem.scan) cut_cell() (in module abtem.atoms) CUTOFF (in module abtem.magnetism.iam) cutoff() (abtem.integrals.FieldIntegrator method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.integrals.ScatteringFactorProjectionIntegrals method) (abtem.magnetism.iam.QuasiDipoleProjections method) cutoff_angles (abtem.waves.BaseWaves property) cutoff_frequencies (abtem.waves.BaseWaves property) cutoff_taper() (in module abtem.integrals) cutoff_tolerance (abtem.integrals.GaussianProjectionIntegrals property) (abtem.integrals.QuadratureProjectionIntegrals property)

D

decompose_affine_transform() (in module abtem.atoms) default_cbar_scalar_formatter() (in module abtem.visualize.artists) default_ensemble_chunks (abtem.mcf.DiagonalMCF property) default_mtf_func() (in module abtem.mtf) defaults (in module abtem.core.config) defocus (abtem.transfer.Aberrations property) deprecations (in module abtem.core.config) depth_profile() (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.FieldArray method) (abtem.waves.Waves method) depths (abtem.inelastic.plasmons.PlasmonAxis property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property) derivative_accuracy (abtem.multislice.RealSpaceMultislice attribute) detect() (abtem.detectors.AnnularDetector method) (abtem.detectors.BaseDetector method) (abtem.detectors.FlexibleAnnularDetector method) (abtem.detectors.PixelatedDetector method) (abtem.detectors.SpectralSlitDetector method) (abtem.detectors.WavesDetector method) detectors (abtem.multislice.MultisliceTransform property) device (abtem.array.ArrayObject property) (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.bloch.dynamical.BlochWaves property) (abtem.bloch.dynamical.StructureFactor property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.waves.BaseWaves property) (abtem.waves.Waves property) (abtem.waves.WavesBuilder property) device_name_from_array_module() (in module abtem.core.backend) DiagonalMCF (class in abtem.mcf) differentials() (abtem.measurements.PolarMeasurements method) diffraction_patterns() (abtem.waves.Waves method) DiffractionPatterns (class in abtem.measurements)

diffractograms() (abtem.measurements.Images method) dimensions (abtem.core.grid.Grid property) (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) direction (abtem.core.axes.AxisAlignedTiltAxis attribute) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) directions (abtem.inelastic.phonons.FrozenPhonons property) discrete_cmap() (in module abtem.visualize.visualizations) disk_meshgrid() (in module abtem.core.grid) disk_meshgrid_iter() (in module abtem.core.grid) DistributionFromValues (class in abtem.distributions) distributions (abtem.distributions.MultidimensionalDistribution property) (abtem.transform.WavesTransform property) DivergedError divide() (abtem.distributions.BaseDistribution method) (abtem.distributions.DistributionFromValues method) (abtem.distributions.MultidimensionalDistribution method) DomainColoringArtist (class in abtem.visualize.artists) dose (abtem.noise.NoiseTransform property) double_channel (abtem.inelastic.core_loss.BaseTransitionPotential property) (abtem.inelastic.core_loss.TransitionPotential property) downsample (abtem.prism.s_matrix.SMatrix property) downsample() (abtem.waves.Waves method) downsampled_gpts (abtem.prism.s_matrix.SMatrix property) draw() (abtem.visualize.artists.ScaledCircleCollection method) draw_azimuthal_angle() (in module abtem.inelastic.plasmons) draw_events() (abtem.inelastic.plasmons.MonteCarloPlasmons method) draw_radial_scattering_angle() (in module abtem.inelastic.plasmons) draw_scattering_depths() (in module abtem.inelastic.plasmons) dtype (abtem.array.ArrayObject property) (abtem.waves.BaseWaves property) dummy_probes() (abtem.prism.s_matrix.BaseSMatrix method) DummyFrozenPhonons (class in abtem.inelastic.phonons) dwell_time (abtem.noise.ScanNoiseTransform property)

E

e_values (abtem.measurements.MomentumResolvedSpectrum property) edge_softness (abtem.transfer.Bullseye property) eigenvectors (abtem.mcf.DiagonalMCF property) electron_configurations (in module abtem.core.electron_configurations) em (in module abtem.array) EmptyEnsemble (class in abtem.core.ensemble) EmptyTransform (class in abtem.transform) end (abtem.scan.GridScan property) (abtem.scan.LineScan property) endpoint (abtem.core.axes.RealSpaceAxis attribute) (abtem.core.grid.Grid property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) energies (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble property) energy (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.bloch.dynamical.BlochWaves property) (abtem.core.energy.Accelerator property) (abtem.core.energy.HasAcceleratorMixin property) (abtem.inelastic.core_loss.AtomicWaveFunction property) (abtem.inelastic.core_loss.RadialWavefunction property) (abtem.transfer.BaseTransferFunction property) (abtem.waves.EnergyEnsemble property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) energy2mass() (in module abtem.core.energy) energy2sigma() (in module abtem.core.energy) energy2wavelength() (in module abtem.core.energy) EnergyAxis (class in abtem.core.axes) EnergyEnsemble (class in abtem.waves) EnergyLossAxis (class in abtem.core.axes) EnergyResolvedAtomsEnsemble (class in abtem.inelastic.phonons) EnergyUndefinedError Ensemble (class in abtem.core.ensemble) ensemble_axes_metadata (abtem.array.ArrayObject property) (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.core.ensemble.EmptyEnsemble property) (abtem.core.ensemble.Ensemble property) (abtem.inelastic.core_loss.TransitionPotential property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property) (abtem.mcf.DiagonalMCF property) (abtem.multislice.MultisliceTransform property) (abtem.noise.NoiseTransform property) (abtem.noise.ScanNoiseTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.prism.s_matrix.BaseSMatrix attribute) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.tilt.BeamTilt2D property) (abtem.transfer.Aberrations property) (abtem.transfer.Aperture property) (abtem.transfer.BaseAperture property) (abtem.transfer.CTF property) (abtem.transfer.SpatialEnvelope property) (abtem.transfer.TemporalEnvelope property) (abtem.transform.ArrayObjectTransform property) (abtem.waves.EnergyEnsemble property) (abtem.waves.WavesBuilder property) ensemble_blocks() (abtem.core.ensemble.Ensemble method) (abtem.mcf.DiagonalMCF method) ensemble_dims (abtem.array.ArrayObject property) ensemble_mean (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.plasmons.MonteCarloPlasmons property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property) (abtem.potentials.iam.CrystalPotential property)

ensemble_partial() (abtem.mcf.DiagonalMCF method) ensemble_shape (abtem.array.ArrayObject property) (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.core.ensemble.EmptyEnsemble property) (abtem.core.ensemble.Ensemble property) (abtem.distributions.EnsembleFromDistributions property) (abtem.inelastic.core_loss.TransitionPotential property) (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble property) (abtem.inelastic.phonons.FrozenPhonons property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property) (abtem.mcf.DiagonalMCF property) (abtem.measurements.IndexedDiffractionPatterns property) (abtem.multislice.MultisliceTransform property) (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) (abtem.prism.s_matrix.BaseSMatrix attribute) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.BaseScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.BeamTilt2D property) (abtem.transform.ArrayObjectTransform property) (abtem.transform.TransformFromFunc property) (abtem.waves.WavesBuilder property) EnsembleFromDistributions (class in abtem.distributions) EnsembleTransform (class in abtem.transform) ensure_cuda_cluster() (in module abtem.core.backend) ensure_lazy() (abtem.array.ArrayObject method) ensure_list() (in module abtem.core.utils) ensure_real_space() (abtem.waves.Waves method) ensure_reciprocal_space() (abtem.waves.Waves method) eps0 (in module abtem.core.constants) epsilon (abtem.inelastic.core_loss.SubshellTransitions property) equal_sized_chunks() (in module abtem.core.chunks) equal_slice_thicknesses() (in module abtem.bloch.dynamical) EqualityMixin (class in abtem.core.utils) estimate_necessary_excitation_error() (in module abtem.bloch.indexing) estimate_potential_chunk_size() (in module abtem.core.chunks) estimate_scan_batch_size() (in module abtem.core.chunks) euler_sequence() (in module abtem.atoms) euler_to_rotation() (in module abtem.atoms) evaluate() (abtem.mcf.DiagonalMCF method) EwaldParametrization (class in abtem.parametrizations) excitation_errors() (abtem.bloch.dynamical.BlochWaves method) (in module abtem.bloch.utils) excitations (abtem.inelastic.plasmons.PlasmonAxis property) excitations_weights() (in module abtem.inelastic.plasmons) excited_configuration (abtem.inelastic.core_loss.SubshellTransitions property) exctinction_distances() (in module abtem.bloch.dynamical) exit_planes (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.FieldArray property) exit_thicknesses (abtem.potentials.iam.BaseField property) expand_dims() (abtem.array.ArrayObject method) expand_dims_to_broadcast() (in module abtem.core.utils) expansion_scope (abtem.multislice.FourierMultislice attribute) (abtem.multislice.RealSpaceMultislice attribute) expm() (in module abtem.bloch.dynamical) (in module abtem.bloch.matrix_exponential) extent (abtem.core.grid.Grid property) (abtem.core.grid.HasGrid2DMixin property) (abtem.detectors.SpectralSlitDetector property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.PolarMeasurements property) (abtem.scan.LineScan property)

F

fast_filter_excitation_errors() (in module abtem.bloch.utils) fast_roll() (in module abtem.inelastic.core_loss) fd_coefficients (in module abtem.finite_difference) fft2() (in module abtem.core.fft) fft2_convolve() (in module abtem.core.fft) fft_crop() (in module abtem.core.fft) fft_interpolate() (in module abtem.core.fft) fft_interpolation_masks() (in module abtem.core.fft) fft_shift() (in module abtem.core.fft) fft_shift_kernel() (in module abtem.core.fft) fftn() (in module abtem.core.fft) fftshift (abtem.core.axes.ReciprocalSpaceAxis attribute) (abtem.measurements.DiffractionPatterns property) FieldArray (class in abtem.potentials.iam) FieldIntegrator (class in abtem.integrals) fig (abtem.visualize.axes_grid.AxesCollection property) (abtem.visualize.axes_grid.AxesGrid property) fill_in_chunk_sizes() (in module abtem.core.chunks) filter_by_intensity() (abtem.inelastic.core_loss.TransitionPotential method) (abtem.inelastic.core_loss.TransitionPotentialArray method) filter_reciprocal_space_vectors() (in module abtem.bloch.utils) filter_sites() (abtem.inelastic.core_loss.TransitionPotentialArray method) finite (abtem.integrals.FieldIntegrator property) (abtem.magnetism.iam.QuasiDipoleProjections property) finite_difference_coefficients() (in module abtem.finite_difference) finite_projected_potential() (abtem.parametrizations.Parametrization method) finite_projected_scattering_factor() (abtem.parametrizations.Parametrization method) (in module abtem.parametrizations.functions.peng) fit() (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) flatten_list_of_lists() (in module abtem.core.utils) FlexibleAnnularDetector (class in abtem.detectors) flip_atoms() (in module abtem.atoms) flip_phase (abtem.transfer.CTF property) flyback_time (abtem.noise.ScanNoiseTransform property) focal_spread (abtem.mcf.DiagonalMCF property) (abtem.transfer.CTF property) (abtem.transfer.TemporalEnvelope property) format_all_titles() (abtem.core.axes.OrdinalAxis method) format_axes_metadata() (in module abtem.core.axes) format_coordinates() (abtem.core.axes.AxisMetadata method) (abtem.core.axes.LinearAxis method) (abtem.core.axes.NonLinearAxis method)

format_label() (abtem.core.axes.AxisMetadata method) (abtem.core.axes.ScaleAxis method) (in module abtem.core.axes) format_title() (abtem.core.axes.AxisMetadata method) (abtem.core.axes.EnergyAxis method) (abtem.core.axes.EnergyLossAxis method) (abtem.core.axes.NonLinearAxis method) (abtem.core.axes.OrdinalAxis method) (abtem.core.axes.PositionsAxis method) (in module abtem.core.axes) format_type() (abtem.core.axes.AxisMetadata method) format_units() (in module abtem.core.units) format_value() (in module abtem.core.axes) FourierMultislice (class in abtem.multislice) FresnelPropagator (class in abtem.multislice) from_array_and_metadata() (abtem.array.ArrayObject class method) (abtem.bloch.dynamical.StructureFactorArray class method) (abtem.inelastic.core_loss.TransitionPotentialArray method) (abtem.magnetism.iam.MagneticFieldArray class method) (abtem.magnetism.iam.VectorPotentialArray class method) (abtem.measurements.BaseMeasurements class method) (abtem.measurements.DiffractionPatterns class method) (abtem.measurements.Images class method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble class method) (abtem.measurements.MomentumResolvedSpectrum class method) (abtem.measurements.PolarMeasurements class method) (abtem.potentials.iam.PotentialArray class method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Waves class method) from_dict() (abtem.core.axes.AxisMetadata static method) from_json() (abtem.parametrizations.Parametrization method) from_values() (in module abtem.distributions) from_zarr() (abtem.array.ArrayObject class method) (in module abtem.array) frozen_phonons (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) FrozenPhonons (class in abtem.inelastic.phonons) FrozenPhononsAxis (class in abtem.core.axes) full_cutoff_angles (abtem.waves.BaseWaves property) full_series() (in module abtem.finite_difference) func (abtem.transform.TransformFromFunc property) func_kwargs (abtem.transform.TransformFromFunc property)

G

g_max (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.bloch.dynamical.BlochWaves property) (abtem.bloch.dynamical.StructureFactor property) g_vec (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochWaves property) g_vec_length (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochWaves property) gaussian() (in module abtem.distributions) gaussian_charge() (in module abtem.parametrizations.functions.ewald) gaussian_parametrization (abtem.integrals.GaussianProjectionIntegrals property) gaussian_potential() (in module abtem.parametrizations.functions.ewald) gaussian_projected_scattering_factors() (in module abtem.integrals) gaussian_projection_weights() (in module abtem.integrals) gaussian_source_size() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) GaussianProjectionIntegrals (class in abtem.integrals) generate_atoms_in_slices() (abtem.slicing.BaseSlicedAtoms method) generate_blocks() (abtem.core.ensemble.Ensemble method) generate_chunked_slices() (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) generate_chunks() (in module abtem.core.chunks) generate_linear_combinations() (in module abtem.bloch.utils) generate_scattered_waves() (abtem.inelastic.core_loss.TransitionPotentialArray method) generate_slices() (abtem.potentials.charge_density.ChargeDensityPotential method) (abtem.potentials.gpaw.GPAWPotential method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.CrystalPotential method) (abtem.potentials.iam.FieldArray method) get() (in module abtem.core.config) get_all_offsets() (abtem.visualize.artists.ScaledCircleCollection method) get_array() (abtem.antialias.AntialiasAperture method) (abtem.multislice.FresnelPropagator method) get_array_module() (in module abtem.core.backend) get_atoms_in_slices() (abtem.slicing.BaseSlicedAtoms method) (abtem.slicing.SlicedAtoms method) (abtem.slicing.SliceIndexedAtoms method) get_bound_wave_function() (abtem.inelastic.core_loss.SubshellTransitions method) get_chunk() (abtem.potentials.iam.TransmissionFunction method) get_conversion_factor() (in module abtem.core.units) get_core_correction_interpolators() (in module abtem.potentials.gpaw) get_corrections() (abtem.integrals.GaussianProjectionIntegrals method) get_cuda_cluster_client() (in module abtem.core.backend) get_data_path() (in module abtem.core.utils) get_detector_region() (abtem.detectors.AnnularDetector method) (abtem.detectors.SpectralSlitDetector method) get_dtype() (in module abtem.core.utils) get_ensemble_hkl_mask() (abtem.bloch.dynamical.BlochwaveEnsemble method) get_excited_wave_functions() (abtem.inelastic.core_loss.SubshellTransitions method) get_extent() (in module abtem.visualize.artists) get_fftw_object() (in module abtem.core.fft) get_figure() (abtem.visualize.visualizations.Visualization method) get_from_metadata() (abtem.array.ArrayObject method) get_function() (abtem.parametrizations.Parametrization method) get_gaussians() (abtem.integrals.GaussianProjectionIntegrals method) get_integral_table() (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.magnetism.iam.QuasiDipoleProjections method) get_items() (abtem.array.ArrayObject method) get_kinematical_diffraction_pattern() (abtem.bloch.dynamical.BlochWaves method) get_logscale() (abtem.visualize.artists.LinesArtist method) get_magnetic_field_from_gpaw() (in module abtem.magnetism.gpaw) get_ndimage_module() (in module abtem.core.backend) get_number_of_grid_points() (abtem.magnetism.gpaw.GPAW method) get_offsets() (abtem.visualize.artists.ScatterArtist method) get_orientation_matrices() (abtem.bloch.dynamical.BlochwaveEnsemble method)

get_parameters() (in module abtem.magnetism.parametrizations) get_positions() (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) get_potential_3d() (abtem.bloch.dynamical.BaseStructureFactor method) (abtem.bloch.dynamical.StructureFactor method) (abtem.bloch.dynamical.StructureFactorArray method) get_power() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) get_projected_potential() (abtem.bloch.dynamical.BaseStructureFactor method) (abtem.bloch.dynamical.StructureFactor method) (abtem.bloch.dynamical.StructureFactorArray method) get_radii() (abtem.visualize.artists.ScaledCircleCollection method) get_reflection_condition() (in module abtem.bloch.utils) get_scale() (abtem.visualize.artists.ScaledCircleCollection method) (abtem.visualize.artists.ScatterArtist method) get_scattering_event_depths() (abtem.inelastic.plasmons.PlasmonScatteringEvents method) get_scattering_factor() (abtem.integrals.ScatteringFactorProjectionIntegrals method) get_scipy_module() (in module abtem.core.backend) get_shortest_g_vec_length() (in module abtem.bloch.utils) get_sliced_atoms() (abtem.potentials.iam.CrystalPotential method) get_stencil() (abtem.finite_difference.LaplaceOperator method) get_transition_potential() (abtem.inelastic.core_loss.BaseTransitionCollection method) get_transition_potentials() (abtem.inelastic.core_loss.SubshellTransitions method) get_transition_quantum_numbers() (abtem.inelastic.core_loss.SubshellTransitions method) get_transitions() (abtem.inelastic.core_loss.SubshellTransitions method) get_value_limits() (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) get_vector_potential_from_gpaw() (in module abtem.magnetism.gpaw) get_xlim() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) get_ylim() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) GPAW (class in abtem.magnetism.gpaw) gpaw_magnetic_fields() (in module abtem.magnetism.gpaw) GPAWMagneticField (class in abtem.magnetism.gpaw) GPAWMagneticFields (class in abtem.magnetism.gpaw) GPAWParametrization (class in abtem.potentials.gpaw) GPAWPotential (class in abtem.potentials.gpaw) GPAWVectorPotential (class in abtem.magnetism.gpaw) gpts (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.StructureFactorArray property) (abtem.core.grid.Grid property) (abtem.core.grid.HasGrid2DMixin property) (abtem.potentials.iam.CrystalPotential property) (abtem.scan.LineScan property) grid (abtem.core.grid.HasGrid2DMixin property) Grid (class in abtem.core.grid) gridrefinement (abtem.potentials.gpaw.GPAWPotential property) GridScan (class in abtem.scan) GridUndefinedError

H

hard_aperture() (in module abtem.transfer) HasAcceleratorMixin (class in abtem.core.energy) HasGrid2DMixin (class in abtem.core.grid) hkl (abtem.bloch.dynamical.BaseStructureFactor property) (abtem.bloch.dynamical.BlochWaves property) hkl_mask (abtem.bloch.dynamical.BlochWaves property)

hkl_strings_to_array() (in module abtem.bloch.utils) hs (in module abtem.array) hsl (in module abtem.core.colors) hsl_cmap (in module abtem.core.colors) hsluv (in module abtem.core.colors) hsluv_cmap (in module abtem.core.colors)

I

ifft2() (in module abtem.core.fft) ifftn() (in module abtem.core.fft) imag() (abtem.measurements.BaseMeasurements method) (abtem.waves.Waves method) ImageArtist (class in abtem.visualize.artists) ImageGUI (class in abtem.visualize.widgets) Images (class in abtem.measurements) in_place (abtem.transform.ReciprocalSpaceMultiplication property) index_diffraction_spots() (abtem.measurements.DiffractionPatterns method) (in module abtem.bloch.indexing) index_mask() (in module abtem.magnetism.iam) IndexedDiffractionPatterns (class in abtem.measurements) indexing_axes (abtem.visualize.visualizations.Visualization property) inner (abtem.detectors.AnnularDetector property) inner_cutoff (abtem.transfer.AnnularAperture property) insert_empty_axis() (in module abtem.core.utils) integrate() (abtem.integrals.ProjectionIntegralTable method) (abtem.measurements.PolarMeasurements method) integrate_disc() (abtem.measurements.Images method) (in module abtem.measurements) integrate_ellipse_around_pixels() (in module abtem.bloch.indexing) integrate_gradient() (abtem.measurements.Images method) integrate_gradient_fourier() (in module abtem.potentials.charge_density) integrate_on_grid() (abtem.integrals.FieldIntegrator method) (abtem.integrals.GaussianProjectionIntegrals method) (abtem.integrals.QuadratureProjectionIntegrals method) (abtem.integrals.ScatteringFactorProjectionIntegrals method) (abtem.magnetism.iam.QuasiDipoleProjections method) integrate_radial() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) integrate_slice() (in module abtem.potentials.gpaw) integrated_center_of_mass() (abtem.measurements.DiffractionPatterns method) integrated_intensities() (abtem.inelastic.core_loss.TransitionPotential method) (abtem.inelastic.core_loss.TransitionPotentialArray method) integration_step (abtem.integrals.QuadratureProjectionIntegrals property) intensities (abtem.measurements.IndexedDiffractionPatterns property) intensities_dict (abtem.measurements.IndexedDiffractionPatterns property) intensity() (abtem.measurements.BaseMeasurements method) (abtem.waves.Waves method) interact() (abtem.visualize.visualizations.Visualization method) interleave() (in module abtem.core.utils)

interpolate() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.Images method) (in module abtem.magnetism.iam) interpolate_bilinear_cuda (in module abtem.measurements) interpolate_quasi_dipole_field_projections() (in module abtem.magnetism.iam) interpolate_quasi_dipole_vector_field_projections() (in module abtem.magnetism.iam) interpolate_radial_functions() (in module abtem.integrals) interpolation (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) ipywidgets_not_installed (in module abtem.visualize.widgets) is_base_distribution_tuple() (in module abtem.bloch.dynamical) is_broadcastable() (in module abtem.core.utils) is_cell_hexagonal() (in module abtem.atoms) is_cell_orthogonal() (in module abtem.atoms) is_cell_valid() (in module abtem.atoms) is_complex (abtem.array.ArrayObject property) is_fast_fft_size() (in module abtem.core.fft) is_gpu_dask_client() (in module abtem.core.backend) is_lazy (abtem.array.ArrayObject property) (abtem.potentials.charge_density.ChargeDensityPotential property) is_number() (in module abtem.slicing) is_rotations_ensemble() (in module abtem.bloch.dynamical) is_scalar() (in module abtem.core.utils) is_tuple_of_ints() (in module abtem.core.chunks) is_tuple_of_ints_or_tuple_of_ints() (in module abtem.core.chunks) is_tuple_of_ints_or_tuple_of_tuple_of_ints() (in module abtem.core.chunks) is_tuple_of_tuple_of_ints() (in module abtem.core.chunks) is_valid_rotation_axes() (in module abtem.bloch.dynamical) is_valid_rotations() (in module abtem.bloch.dynamical) is_validated_chunks() (in module abtem.core.chunks) is_waves_base_measurements_or_list() (in module abtem.multislice) item_metadata() (abtem.core.axes.AxisAlignedTiltAxis method) (abtem.core.axes.AxisMetadata method) (abtem.core.axes.EnergyAxis method) (abtem.core.axes.EnergyLossAxis method) (abtem.core.axes.OrdinalAxis method) (abtem.core.axes.TiltAxis method) itemset() (in module abtem.core.utils) iterate_chunk_ranges() (in module abtem.core.chunks)

J

join_tuples() (in module abtem.transform)

K

kappa (in module abtem.core.constants)

KirklandParametrization (class in abtem.parametrizations)

L

l (abtem.inelastic.core_loss.AtomicWaveFunction property) (abtem.inelastic.core_loss.RadialWavefunction property) (abtem.inelastic.core_loss.SubshellTransitions property) label (abtem.core.axes.AxisMetadata attribute) (abtem.core.axes.EnergyAxis attribute) (abtem.core.axes.EnergyLossAxis attribute) (abtem.core.axes.FrozenPhononsAxis attribute) (abtem.core.axes.ParameterAxis attribute) (abtem.core.axes.PositionsAxis attribute) (abtem.core.axes.ScaleAxis attribute) (abtem.core.axes.SpinAxis attribute) (abtem.core.axes.ThicknessAxis attribute) (abtem.core.axes.UnknownAxis attribute) (abtem.inelastic.plasmons.PlasmonAxis attribute) label_to_index() (in module abtem.core.utils) LaplaceOperator (class in abtem.finite_difference) latex_float() (in module abtem.core.axes) lazy() (abtem.array.ArrayObject method) limits (abtem.integrals.ProjectionIntegralTable property) (abtem.measurements.DiffractionPatterns property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property)

limits() (abtem.core.axes.AxisMetadata method) line_profiles() (abtem.parametrizations.Parametrization method) LinearAxis (class in abtem.core.axes) LinesArtist (class in abtem.visualize.artists) LineScan (class in abtem.scan) LinesGUI (class in abtem.visualize.widgets) LobatoParametrization (class in abtem.parametrizations) local_potential() (abtem.inelastic.core_loss.TransitionPotentialArray method) logger (in module abtem.core.backend) lookahead() (in module abtem.multislice) lorentzian() (in module abtem.distributions) lorentzian_source_size() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) lprimes (abtem.inelastic.core_loss.SubshellTransitions property) LyonParametrization (class in abtem.magnetism.parametrizations)

M

magnetic_field (abtem.magnetism.gpaw.GPAWMagneticFields attribute) magnetic_field_3d() (in module abtem.magnetism.iam) MagneticField (class in abtem.magnetism.iam) MagneticFieldArray (class in abtem.magnetism.iam) make_hkl_grid() (in module abtem.bloch.utils) make_toggle_hkl_button() (in module abtem.visualize.widgets) match() (abtem.core.energy.Accelerator method) (abtem.core.grid.Grid method) match_grid() (abtem.core.grid.HasGrid2DMixin method) match_probe() (abtem.scan.BaseScan method) (abtem.scan.CustomScan method) (abtem.scan.GridScan method) (abtem.scan.LineScan method) max() (abtem.array.ArrayObject method) max_angle (abtem.detectors.PixelatedDetector property) max_angles (abtem.measurements.DiffractionPatterns property) max_batch_expansion (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) max_excitations (abtem.inelastic.plasmons.PlasmonScatteringEvents property) max_frequency (abtem.measurements.DiffractionPatterns property) (abtem.noise.ScanNoiseTransform property) max_rank (abtem.prism.s_matrix.SMatrix property) max_reciprocal_space_vector_length() (abtem.measurements.IndexedDiffractionPatterns method) max_terms (abtem.multislice.RealSpaceMultislice attribute) mean() (abtem.array.ArrayObject method) mean_free_path (abtem.inelastic.plasmons.MonteCarloPlasmons property) mean_squared_deviations() (abtem.inelastic.phonons.AtomsEnsemble method) measurement (abtem.visualize.visualizations.Visualization property) MeasurementsEnsemble (class in abtem.measurements) merge_close_atoms() (in module abtem.atoms) metadata (abtem.array.ArrayObject property) (abtem.inelastic.core_loss.BaseTransitionPotential property) (abtem.inelastic.core_loss.TransitionPotential property) (abtem.measurements.BaseMeasurements property) (abtem.noise.NoiseTransform property) (abtem.noise.ScanNoiseTransform property) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.scan.LineScan property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.tilt.BeamTilt2D property) (abtem.transfer.BaseAperture property) (abtem.transform.ArrayObjectTransform property) (abtem.waves.BaseWaves property) (abtem.waves.PlaneWave property) (abtem.waves.Probe property) (abtem.waves.Waves property) miller_indices (abtem.measurements.IndexedDiffractionPatterns property) miller_to_miller_bravais() (in module abtem.bloch.indexing) min() (abtem.array.ArrayObject method) min_contrast (abtem.inelastic.core_loss.SubshellTransitions property) minimum_crop() (in module abtem.prism.utils) ml (abtem.inelastic.core_loss.AtomicWaveFunction property) module abtem abtem.antialias abtem.array abtem.atoms abtem.bloch abtem.bloch.dynamical abtem.bloch.indexing abtem.bloch.matrix_exponential abtem.bloch.utils abtem.core abtem.core.axes abtem.core.backend abtem.core.chunks abtem.core.colors abtem.core.complex abtem.core.config abtem.core.constants abtem.core.diagnostics abtem.core.electron_configurations abtem.core.energy abtem.core.ensemble abtem.core.fft abtem.core.grid abtem.core.units abtem.core.utils abtem.detectors abtem.distributions abtem.finite_difference abtem.inelastic abtem.inelastic.core_loss abtem.inelastic.phonons abtem.inelastic.plasmons abtem.integrals abtem.magnetism abtem.magnetism.gpaw abtem.magnetism.iam abtem.magnetism.parametrizations abtem.magnetism.pauli abtem.magnetism.utils abtem.mcf abtem.measurements abtem.mtf abtem.multislice abtem.noise abtem.parametrizations abtem.parametrizations.functions abtem.parametrizations.functions.ewald abtem.parametrizations.functions.kirkland abtem.parametrizations.functions.lobato abtem.parametrizations.functions.peng abtem.potentials abtem.potentials.charge_density abtem.potentials.gpaw abtem.potentials.iam abtem.prism abtem.prism.s_matrix abtem.prism.utils abtem.scan abtem.slicing abtem.tilt abtem.transfer abtem.transform abtem.visualize abtem.visualize.artists abtem.visualize.axes_grid abtem.visualize.visualizations abtem.visualize.widgets abtem.waves

momentum_resolved_spectrum() (in module abtem.measurements) MomentumResolvedSpectrum (class in abtem.measurements) MonteCarloPlasmons (class in abtem.inelastic.plasmons) moveaxis() (in module abtem.array) MTF (class in abtem.mtf) multi_output_blockwise() (in module abtem.array) MultidimensionalDistribution (class in abtem.distributions) multislice() (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.PlaneWave method) (abtem.waves.Probe method) (abtem.waves.Waves method) multislice_and_detect() (in module abtem.multislice) multislice_func (abtem.multislice.MultisliceTransform property) multislice_step() (in module abtem.finite_difference) MultisliceTransform (class in abtem.multislice)

N

n (abtem.inelastic.core_loss.AtomicWaveFunction property) (abtem.inelastic.core_loss.RadialWavefunction property) (abtem.inelastic.core_loss.SubshellTransitions property) nbins_azimuthal (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) nbins_radial (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) ncols (abtem.visualize.axes_grid.AxesCollection property) (abtem.visualize.axes_grid.AxesGrid property) next_fast_fft_size() (in module abtem.core.fft) no_base_chunks() (abtem.array.ArrayObject method) no_default (in module abtem.core.config) NoiseTransform (class in abtem.noise) NonLinearAxis (class in abtem.core.axes) norm (abtem.visualize.artists.ImageArtist property) normalize (abtem.waves.PlaneWave property) normalize() (abtem.waves.Waves method) normalize_axes() (in module abtem.core.utils) normalize_ensemble() (abtem.measurements.BaseMeasurements method) normalize_to_spot() (abtem.measurements.IndexedDiffractionPatterns method) NotConvergedError nrows (abtem.visualize.axes_grid.AxesCollection property) (abtem.visualize.axes_grid.AxesGrid property) nth (in module abtem.inelastic.plasmons) ntuples (in module abtem.inelastic.plasmons) num_bloch_waves (abtem.bloch.dynamical.BlochWaves property) num_cbars (abtem.visualize.artists.Artist2D property) (abtem.visualize.artists.DomainColoringArtist attribute) (abtem.visualize.artists.ImageArtist attribute) (abtem.visualize.artists.LinesArtist attribute) (abtem.visualize.artists.ScatterArtist attribute)

num_components (abtem.noise.ScanNoiseTransform property) num_configs (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.BaseFrozenPhonons property) (abtem.inelastic.phonons.DummyFrozenPhonons property) (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble property) (abtem.inelastic.phonons.FrozenPhonons property) num_configurations (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.CrystalPotential property) (abtem.potentials.iam.FieldArray property) num_events (abtem.inelastic.plasmons.PlasmonScatteringEvents property) num_excitations (abtem.inelastic.plasmons.PlasmonScatteringEvents property) num_exit_planes (abtem.potentials.iam.BaseField property) num_flips (abtem.transfer.RadialPhasePlate property) num_frozen_phonons (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) num_positions (abtem.scan.BaseScan property) num_rings (abtem.transfer.Bullseye property) num_samples (abtem.inelastic.plasmons.MonteCarloPlasmons property) num_slices (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.CrystalPotential property) (abtem.slicing.BaseSlicedAtoms property) num_spokes (abtem.transfer.Bullseye property) number_to_tuple() (in module abtem.core.utils) numbers (abtem.inelastic.phonons.AtomsEnsemble property) (abtem.inelastic.phonons.DummyFrozenPhonons property) numerov() (in module abtem.inelastic.core_loss) nyquist_sampling (abtem.transfer.BaseAperture property) nyquist_sampling() (in module abtem.transfer)

O

occupancy (abtem.bloch.dynamical.StructureFactor property) offset (abtem.core.axes.LinearAxis attribute) (abtem.detectors.AnnularDetector property) (abtem.detectors.SpectralSlitDetector property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.PolarMeasurements property) optimize_cutoff() (in module abtem.integrals) orbital_filling_factor (abtem.inelastic.core_loss.TransitionPotential property)

order (abtem.inelastic.core_loss.SubshellTransitions property) (abtem.multislice.FourierMultislice attribute) (abtem.multislice.RealSpaceMultislice attribute) OrdinalAxis (class in abtem.core.axes) orthogonalize_cell() (in module abtem.atoms) outer (abtem.detectors.AnnularDetector property) outer_angle (abtem.measurements.PolarMeasurements property) overlapping_spots_mask() (in module abtem.bloch.indexing) OverlayImshowArtist (class in abtem.visualize.artists)

P

pad_atoms() (in module abtem.atoms) ParameterAxis (class in abtem.core.axes) parameters (abtem.magnetism.parametrizations.LyonParametrization property) (abtem.parametrizations.Parametrization property) parametrization (abtem.bloch.dynamical.StructureFactor property) (abtem.integrals.QuadratureProjectionIntegrals property) (abtem.integrals.ScatteringFactorProjectionIntegrals property) (abtem.magnetism.iam.QuasiDipoleProjections property) Parametrization (class in abtem.parametrizations) pbar (abtem.core.diagnostics.TqdmWrapper property) pd (in module abtem.measurements) PengParametrization (class in abtem.parametrizations) periodic (abtem.integrals.FieldIntegrator property) (abtem.magnetism.iam.QuasiDipoleProjections property) (abtem.prism.s_matrix.SMatrixArray property) periodic_crop() (in module abtem.measurements) phase() (abtem.measurements.BaseMeasurements method) (abtem.waves.Waves method) phase_axes_image (abtem.visualize.artists.DomainColoringArtist property) phase_shift (abtem.transfer.RadialPhasePlate property) (abtem.transfer.Zernike property) phase_shift() (abtem.waves.Waves method) phonon_loss_diffraction_patterns() (abtem.waves.Waves method) (in module abtem.measurements) PixelatedDetector (class in abtem.detectors) plane_to_axes() (in module abtem.atoms) plane_wave_basis() (in module abtem.bloch.dynamical) plane_wave_coefficients() (in module abtem.bloch.dynamical) plane_waves() (in module abtem.prism.utils) PlaneWave (class in abtem.waves) PlasmonAxis (class in abtem.inelastic.plasmons) PlasmonScatteringEvents (class in abtem.inelastic.plasmons) point_charge_potential() (in module abtem.parametrizations.functions.ewald) point_resolution (abtem.transfer.CTF property) point_resolution() (in module abtem.transfer) poisson_noise() (abtem.measurements.BaseMeasurements method) (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) polar2cartesian() (in module abtem.transfer) polar_aliases (in module abtem.transfer) polar_binning() (abtem.measurements.DiffractionPatterns method) polar_spatial_frequencies() (in module abtem.core.grid) polar_symbols (in module abtem.transfer) PolarMeasurements (class in abtem.measurements)

position_quantization (abtem.prism.s_matrix.SMatrix property) positions (abtem.measurements.IndexedDiffractionPatterns property) (abtem.scan.CustomScan property) positions_dict (abtem.measurements.IndexedDiffractionPatterns property) PositionsAxis (class in abtem.core.axes) potential (abtem.magnetism.gpaw.GPAWMagneticFields attribute) (abtem.multislice.MultisliceTransform property) (abtem.prism.s_matrix.SMatrix property) Potential (class in abtem.potentials.iam) potential() (abtem.parametrizations.Parametrization method) (abtem.potentials.gpaw.GPAWParametrization method) (in module abtem.parametrizations.functions.ewald) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) potential_derivative() (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) potential_unit (abtem.potentials.iam.CrystalPotential property) PotentialArray (class in abtem.potentials.iam) power_law (abtem.transfer.RadialPhasePlate property) powerscale_slider (abtem.visualize.widgets.BaseGUI property) precession_tilts() (in module abtem.tilt) pretty_print_transform() (in module abtem.atoms) prism_coefficients() (in module abtem.prism.utils) prism_transition_potential_scan() (in module abtem.inelastic.core_loss) prism_transition_potential_scan_beam_basis() (in module abtem.inelastic.core_loss) prism_wave_vectors() (in module abtem.prism.utils) PrismPlaneWavesAxis (class in abtem.core.axes) Probe (class in abtem.waves) profiles() (abtem.transfer.CTF method) (abtem.waves.Probe method) project() (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.FieldArray method) projected_potential() (abtem.parametrizations.Parametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) projected_scattering_factor() (abtem.parametrizations.Parametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) ProjectionIntegralTable (class in abtem.integrals) propagate() (abtem.multislice.FresnelPropagator method) propagator_taylor_series() (in module abtem.finite_difference) pseudo_voigtian() (in module abtem.distributions) pseudo_voigtian_source_size() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) push_config_to_workers() (in module abtem.core.backend)

Q

q_max (abtem.detectors.SpectralAnnularDetector property) (abtem.detectors.SpectralSlitDetector property) q_min (abtem.detectors.SpectralAnnularDetector property) (abtem.detectors.SpectralSlitDetector property) q_sampling (abtem.detectors.SpectralAnnularDetector property) (abtem.detectors.SpectralSlitDetector property) q_values (abtem.measurements.MomentumResolvedSpectrum property)

quad_order (abtem.integrals.QuadratureProjectionIntegrals property) QuadratureProjectionIntegrals (class in abtem.integrals) quantum_number (abtem.transfer.Vortex property) quantum_numbers (abtem.inelastic.core_loss.AtomicWaveFunction property) QuasiDipoleMagneticFieldProjections (class in abtem.magnetism.iam) QuasiDipoleProjections (class in abtem.magnetism.iam) QuasiDipoleVectorPotentialProjections (class in abtem.magnetism.iam)

R

radial_angles (abtem.inelastic.plasmons.PlasmonAxis property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property) radial_binning() (abtem.measurements.DiffractionPatterns method) radial_cutoff() (in module abtem.magnetism.iam) radial_gpts (abtem.integrals.ProjectionIntegralTable property) radial_grid (abtem.inelastic.core_loss.AtomicWaveFunction property) (abtem.inelastic.core_loss.RadialWavefunction property) radial_offset (abtem.measurements.PolarMeasurements property) radial_prefactor_a() (in module abtem.magnetism.iam) radial_prefactor_b1() (in module abtem.magnetism.iam) radial_prefactor_b2() (in module abtem.magnetism.iam) radial_sampling (abtem.detectors.AnnularDetector property) (abtem.detectors.FlexibleAnnularDetector property) (abtem.detectors.SegmentedDetector property) (abtem.measurements.PolarMeasurements property) radial_schroedinger_equation() (in module abtem.inelastic.core_loss) RadialPhasePlate (class in abtem.transfer) RadialWavefunction (class in abtem.inelastic.core_loss) randomize() (abtem.inelastic.phonons.AtomsEnsemble method) (abtem.inelastic.phonons.BaseFrozenPhonons method) (abtem.inelastic.phonons.DummyFrozenPhonons method) (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble method) (abtem.inelastic.phonons.FrozenPhonons method) rank (abtem.prism.s_matrix.CompressedSMatrixArray property) ravel_hkl() (in module abtem.bloch.utils) Reader (in module abtem.inelastic.phonons) real() (abtem.measurements.BaseMeasurements method) (abtem.waves.Waves method) real_space_grid() (in module abtem.core.grid) RealSpaceAxis (class in abtem.core.axes) RealSpaceLineProfiles (class in abtem.measurements) RealSpaceMultislice (class in abtem.multislice) rechunk() (abtem.array.ArrayObject method) (abtem.prism.s_matrix.SMatrixArray method) reciprocal_cell() (in module abtem.bloch.utils) reciprocal_lattice_vector_lengths() (in module abtem.measurements) reciprocal_lattice_vectors (abtem.measurements.IndexedDiffractionPatterns property) reciprocal_space (abtem.detectors.PixelatedDetector property) (abtem.waves.Waves property) reciprocal_space_axes_metadata (abtem.waves.BaseWaves property) reciprocal_space_gpts() (in module abtem.bloch.utils) reciprocal_space_sampling (abtem.core.grid.Grid property) (abtem.core.grid.HasGrid2DMixin property) reciprocal_space_sampling_to_angular_sampling() (in module abtem.core.energy) ReciprocalSpaceAxis (class in abtem.core.axes)

ReciprocalSpaceLineProfiles (class in abtem.measurements) ReciprocalSpaceMultiplication (class in abtem.transform) rectangle_cutoff_angles (abtem.waves.BaseWaves property) rectangular_offset (abtem.mcf.DiagonalMCF property) reduce() (abtem.prism.s_matrix.CompressedSMatrixArray method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) reduce_ensemble() (abtem.measurements.BaseMeasurements method) (in module abtem.waves) reduce_plane_wave_expansion() (in module abtem.bloch.dynamical) reduce_plasmon_axes() (in module abtem.inelastic.plasmons) refresh() (in module abtem.core.config) relative_difference() (abtem.measurements.BaseMeasurements method) relative_positions_for_centering() (in module abtem.bloch.utils) relativistic_mass_correction() (in module abtem.core.energy) remove() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) remove_artists() (abtem.visualize.visualizations.Visualization method) remove_electron_from_config_str() (in module abtem.core.electron_configurations) (in module abtem.inelastic.core_loss) remove_low_intensity() (abtem.measurements.IndexedDiffractionPatterns method) repetitions (abtem.potentials.charge_density.ChargeDensityPotential property) (abtem.potentials.gpaw.GPAWPotential property) (abtem.potentials.iam.CrystalPotential property) resample (abtem.detectors.PixelatedDetector property) resolve_energy() (in module abtem.core.energy) retrieve_structure_factor_values() (in module abtem.bloch.utils) ring_width (abtem.transfer.Bullseye property) rms_power (abtem.noise.ScanNoiseTransform property) rotate() (abtem.bloch.dynamical.BlochWaves method) rotate_atoms() (in module abtem.atoms) rotate_atoms_to_plane() (in module abtem.atoms) rotate_points_2d() (in module abtem.magnetism.iam) rotate_vector_field() (in module abtem.magnetism.gpaw) rotation (abtem.detectors.SegmentedDetector property) rotation_matrix_from_plane() (in module abtem.atoms) rotation_matrix_to_euler() (in module abtem.atoms) rotations (abtem.bloch.dynamical.BlochwaveEnsemble property) round_auto_derived_gpts() (in module abtem.core.grid) round_gpts_to_interpolation() (abtem.prism.s_matrix.SMatrix method) round_to_fast_fft() (abtem.core.grid.Grid method) round_to_power() (abtem.core.grid.Grid method)

S

safe_ceiling_int() (in module abtem.core.utils) safe_equality() (in module abtem.core.utils) safe_floor_int() (in module abtem.core.utils) SampleAxis (class in abtem.core.axes) samples (abtem.noise.NoiseTransform property) (abtem.noise.ScanNoiseTransform property) sampling (abtem.core.axes.LinearAxis attribute) (abtem.core.axes.RealSpaceAxis attribute) (abtem.core.axes.ReciprocalSpaceAxis attribute) (abtem.core.grid.Grid property) (abtem.core.grid.HasGrid2DMixin property) (abtem.magnetism.iam.QuasiDipoleProjections property) (abtem.measurements.DiffractionPatterns property) (abtem.measurements.Images property) (abtem.measurements.PolarMeasurements property) (abtem.potentials.iam.CrystalPotential property) (abtem.scan.LineScan property) saturation_magnetization() (in module abtem.magnetism.utils) scale_button (abtem.visualize.widgets.BaseGUI property) scale_slider (abtem.visualize.widgets.ScatterGUI property) ScaleAxis (class in abtem.core.axes) ScaleBar (class in abtem.visualize.artists) scaled_parameters() (abtem.parametrizations.EwaldParametrization method) (abtem.parametrizations.KirklandParametrization method) (abtem.parametrizations.LobatoParametrization method) (abtem.parametrizations.Parametrization method) (abtem.parametrizations.PengParametrization method) ScaledCircleCollection (class in abtem.visualize.artists) scan() (abtem.prism.s_matrix.CompressedSMatrixArray method) (abtem.prism.s_matrix.SMatrix method) (abtem.prism.s_matrix.SMatrixArray method) (abtem.waves.Probe method) (abtem.waves.Waves method) scan_noise() (abtem.measurements.Images method) scan_positions (abtem.waves.Probe property) ScanAxis (class in abtem.core.axes) ScanNoiseTransform (class in abtem.noise) ScanWithSampling (in module abtem.scan) scatter() (abtem.inelastic.core_loss.TransitionPotential method) (abtem.inelastic.core_loss.TransitionPotentialArray method) ScatterArtist (class in abtem.visualize.artists) ScatterGUI (class in abtem.visualize.widgets) scattering_factor() (abtem.parametrizations.Parametrization method) (abtem.potentials.gpaw.GPAWParametrization method) (in module abtem.parametrizations.functions.kirkland) (in module abtem.parametrizations.functions.lobato) (in module abtem.parametrizations.functions.peng) scattering_factor_k2() (in module abtem.parametrizations.functions.peng) scattering_factors (abtem.integrals.ScatteringFactorProjectionIntegrals property) ScatteringFactorProjectionIntegrals (class in abtem.integrals) scherzer_defocus (abtem.transfer.CTF property) scherzer_defocus() (in module abtem.transfer) seed (abtem.inelastic.phonons.FrozenPhonons property) (abtem.inelastic.plasmons.MonteCarloPlasmons property) seeds (abtem.noise.NoiseTransform property) (abtem.noise.ScanNoiseTransform property) (abtem.potentials.iam.CrystalPotential property) SegmentedDetector (class in abtem.detectors) semiangle_cutoff (abtem.mcf.DiagonalMCF property) (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) (abtem.transfer.BaseAperture property) (abtem.transfer.CTF property) (abtem.waves.Probe property) set (class in abtem.core.config) set_annotation_kwargs() (abtem.visualize.artists.ScatterArtist method) set_array() (abtem.visualize.artists.ScaledCircleCollection method) set_artists() (abtem.visualize.visualizations.Visualization method) set_cbar_layout() (abtem.visualize.axes_grid.AxesGrid method) set_cbars() (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.ScatterArtist method) (abtem.visualize.visualizations.Visualization method) set_cmap() (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.ScatterArtist method) (abtem.visualize.visualizations.Visualization method) set_column_titles() (abtem.visualize.visualizations.Visualization method) set_common_value_limits() (abtem.visualize.visualizations.Visualization method) set_complex_conversion() (abtem.visualize.visualizations.Visualization method) set_data() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScaledCircleCollection method) (abtem.visualize.artists.ScatterArtist method) set_ensemble_axes_metadata() (abtem.array.ArrayObject method) set_extent() (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) set_legend() (abtem.visualize.artists.LinesArtist method) (abtem.visualize.visualizations.Visualization method) set_logscale() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) (abtem.visualize.visualizations.Visualization method) set_magnetic_moments() (in module abtem.magnetism.utils) set_norm() (abtem.visualize.artists.ScaledCircleCollection method) set_placement() (abtem.visualize.artists.CircleAnnotations method) set_power() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) (abtem.visualize.visualizations.Visualization method) set_row_titles() (abtem.visualize.visualizations.Visualization method) set_scale() (abtem.visualize.artists.ScaledCircleCollection method) (abtem.visualize.artists.ScatterArtist method) set_scale_bars() (abtem.visualize.artists.Artist2D method) (abtem.visualize.visualizations.Visualization method) set_sizes() (abtem.visualize.axes_grid.AxesGrid method) set_threshold() (abtem.inelastic.core_loss.TransitionPotentialArray method) (abtem.visualize.artists.CircleAnnotations method) (abtem.visualize.artists.ScaledCircleCollection method) set_value_limits() (abtem.visualize.artists.Artist method) (abtem.visualize.artists.Artist2D method) (abtem.visualize.artists.DomainColoringArtist method) (abtem.visualize.artists.ImageArtist method) (abtem.visualize.artists.LinesArtist method) (abtem.visualize.artists.ScatterArtist method) (abtem.visualize.visualizations.Visualization method)

set_visible() (abtem.visualize.artists.CircleAnnotations method) set_xlabel() (abtem.visualize.artists.Artist method) (abtem.visualize.visualizations.Visualization method) set_xlim() (abtem.visualize.artists.Artist method) (abtem.visualize.visualizations.Visualization method) set_ylabel() (abtem.visualize.artists.Artist method) (abtem.visualize.visualizations.Visualization method) set_ylim() (abtem.visualize.artists.Artist method) (abtem.visualize.visualizations.Visualization method) sg_max (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.bloch.dynamical.BlochWaves property) shape (abtem.array.ArrayObject property) (abtem.core.ensemble.Ensemble property) (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) (abtem.prism.s_matrix.SMatrix property) (abtem.scan.BaseScan property) (abtem.scan.CustomScan property) (abtem.scan.GridScan property) (abtem.scan.LineScan property) (abtem.tilt.BeamTilt2D property) (abtem.visualize.axes_grid.AxesCollection property) (abtem.visualize.axes_grid.AxesGrid property) (abtem.waves.WavesBuilder property) shift_central_semiangle (abtem.transfer.RadialPhasePlate property) show() (abtem.detectors.SpectralAnnularDetector method) (abtem.detectors.SpectralSlitDetector method) (abtem.inelastic.core_loss.RadialWavefunction method) (abtem.inelastic.core_loss.TransitionPotential method) (abtem.inelastic.core_loss.TransitionPotentialArray method) (abtem.magnetism.gpaw.GPAWMagneticFields method) (abtem.measurements.BaseMeasurements method) (abtem.measurements.IndexedDiffractionPatterns method) (abtem.measurements.MeasurementsEnsemble method) (abtem.measurements.MomentumResolvedSpectrum method) (abtem.measurements.PolarMeasurements method) (abtem.potentials.iam.BaseField method) (abtem.transfer.BaseTransferFunction method) (abtem.waves.Probe method) (abtem.waves.Waves method) show_atoms() (in module abtem.visualize.visualizations) show_cumulative_scattering_events() (abtem.inelastic.plasmons.PlasmonScatteringEvents method) show_depth_profile() (abtem.potentials.iam.BaseField method) (abtem.waves.Waves method) show_excitations_histogram() (abtem.inelastic.plasmons.PlasmonScatteringEvents method) show_scattering_angle_distribution() (abtem.inelastic.plasmons.PlasmonScatteringEvents method) show_weights() (abtem.inelastic.plasmons.PlasmonScatteringEvents method) shrink_cell() (in module abtem.atoms) sigma (abtem.core.energy.Accelerator property) (abtem.prism.s_matrix.CompressedSMatrixArray property) sigma_to_B() (in module abtem.atoms) sigmas (abtem.inelastic.phonons.FrozenPhonons property) (abtem.parametrizations.Parametrization property) sinc() (in module abtem.integrals) singular_values (abtem.prism.s_matrix.CompressedSMatrixArray property) slice_limits (abtem.potentials.iam.BaseField property) (abtem.slicing.BaseSlicedAtoms property) slice_limits() (in module abtem.slicing) slice_potential() (in module abtem.bloch.dynamical) slice_thickness (abtem.magnetism.iam.QuasiDipoleProjections property) (abtem.potentials.iam.BaseField property) (abtem.potentials.iam.FieldArray property) (abtem.slicing.BaseSlicedAtoms property) SlicedAtoms (class in abtem.slicing) SliceIndexedAtoms (class in abtem.slicing) slider_from_axes_metadata() (in module abtem.visualize.widgets) sliders (abtem.visualize.widgets.BaseGUI property) SMatrix (class in abtem.prism.s_matrix) SMatrixArray (class in abtem.prism.s_matrix) snapshots (abtem.inelastic.phonons.EnergyResolvedAtomsEnsemble property) soft (abtem.transfer.AnnularAperture property) (abtem.transfer.Aperture property) (abtem.transfer.Bullseye property) (abtem.transfer.CTF property) (abtem.transfer.RadialPhasePlate property) (abtem.transfer.Vortex property) (abtem.transfer.Zernike property) (abtem.waves.Probe property) soft_aperture() (in module abtem.transfer) soft_edges (abtem.transfer.Bullseye property) sort() (abtem.measurements.IndexedDiffractionPatterns method) source_size (abtem.mcf.DiagonalMCF property) spatial_frequencies() (abtem.core.grid.Grid method) (in module abtem.core.grid) SpatialEnvelope (class in abtem.transfer) SpectralAnnularDetector (class in abtem.detectors) SpectralSlitDetector (class in abtem.detectors) SpinAxis (class in abtem.core.axes) SpinDensityMagneticField (class in abtem.magnetism.gpaw) spoke_width (abtem.transfer.Bullseye property) squeeze() (abtem.array.ArrayObject method) stack() (in module abtem.array) standard_deviations() (abtem.inelastic.phonons.AtomsEnsemble method) standardize_cell() (in module abtem.atoms) start (abtem.scan.GridScan property) (abtem.scan.LineScan property) std() (abtem.array.ArrayObject method) step_size (abtem.detectors.FlexibleAnnularDetector property) storage_device (abtem.prism.s_matrix.SMatrixArray property) store_on_host (abtem.prism.s_matrix.SMatrix property) structure_factor (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.bloch.dynamical.BlochWaves property) structure_factor_1d_to_3d() (in module abtem.bloch.dynamical) structure_factor_to_potential() (in module abtem.bloch.dynamical) structure_matrix_nbytes (abtem.bloch.dynamical.BlochWaves property) StructureFactor (class in abtem.bloch.dynamical) StructureFactorArray (class in abtem.bloch.dynamical) SubshellTransitions (class in abtem.inelastic.core_loss) sum() (abtem.array.ArrayObject method) sum_run_length_encoded (in module abtem.measurements) sum_run_length_encoded_cuda (in module abtem.measurements) superpose_deltas() (in module abtem.integrals) swapaxes() (in module abtem.array) sweep_angle (abtem.detectors.SpectralAnnularDetector property) symbol_to_tex_symbol() (in module abtem.transfer) symmetric_arange() (in module abtem.magnetism.iam)

T

T (in module abtem.core.energy) (in module abtem.core.grid) (in module abtem.core.utils) tables (abtem.integrals.QuadratureProjectionIntegrals property) TemporalEnvelope (class in abtem.transfer) tex_label (abtem.core.axes.AxisMetadata attribute) (abtem.core.axes.ScaleAxis attribute) tex_units (abtem.core.axes.AxisMetadata attribute) th13 (in module abtem.bloch.matrix_exponential) thermal_sigma (abtem.bloch.dynamical.StructureFactor property) thickness (abtem.potentials.iam.BaseField property) ThicknessAxis (class in abtem.core.axes) threshold (abtem.visualize.artists.CircleAnnotations property) (abtem.visualize.artists.ScaledCircleCollection property) tifffile (in module abtem.array) tile() (abtem.magnetism.gpaw.GPAWMagneticFields method) (abtem.measurements.Images method) (abtem.measurements.RealSpaceLineProfiles method) (abtem.potentials.iam.FieldArray method) (abtem.waves.Waves method) tile_scan() (abtem.measurements.DiffractionPatterns method) tilt (abtem.core.axes.AxisAlignedTiltAxis property) (abtem.core.axes.TiltAxis property) (abtem.inelastic.plasmons.PlasmonAxis property) (abtem.prism.s_matrix.SMatrix property) (abtem.tilt.AxisAlignedBeamTilt property) (abtem.tilt.BeamTilt property) (abtem.waves.PlaneWave property) (abtem.waves.WavesBuilder property) tilt_x (abtem.tilt.BeamTilt2D property) tilt_y (abtem.tilt.BeamTilt2D property) TiltAxis (class in abtem.core.axes) TiltType (in module abtem.tilt) TiltType2D (in module abtem.tilt) to_3d_array() (abtem.bloch.dynamical.StructureFactorArray method) to_atoms_ensemble() (abtem.inelastic.phonons.FrozenPhonons method) to_cpu (abtem.detectors.BaseDetector property) to_cpu() (abtem.array.ArrayObject method) to_data_array() (abtem.array.ArrayObject method) (abtem.measurements.IndexedDiffractionPatterns method) to_dataframe() (abtem.measurements.IndexedDiffractionPatterns method) to_dict() (abtem.bloch.dynamical.StructureFactorArray method) (abtem.core.axes.AxisMetadata method)

to_diffraction_patterns() (abtem.measurements.PolarMeasurements method) (abtem.transfer.BaseTransferFunction method) to_gpu() (abtem.array.ArrayObject method) to_hyperspy() (abtem.array.ArrayObject method) (abtem.potentials.iam.FieldArray method) to_image_ensemble() (abtem.measurements.PolarMeasurements method) to_images() (abtem.inelastic.core_loss.TransitionPotentialArray method) (abtem.potentials.iam.BaseField method) (abtem.potentials.iam.FieldArray method) (abtem.waves.Waves method) to_json() (abtem.parametrizations.Parametrization method) to_lineprofiles() (abtem.inelastic.core_loss.RadialWavefunction method) to_measurement_ensemble() (abtem.measurements.BaseMeasurements method) to_ordinal_axis() (abtem.core.axes.AxisMetadata method) (abtem.core.axes.LinearAxis method) (abtem.core.axes.OrdinalAxis method) to_point_spread_functions() (abtem.transfer.CTF method) to_quantem() (abtem.array.ArrayObject method) to_tiff() (abtem.array.ArrayObject method) to_zarr() (abtem.array.ArrayObject method) (abtem.array.ComputableList method) tolerance (abtem.prism.s_matrix.SMatrix property) TqdmWrapper (class in abtem.core.diagnostics) trajectory (abtem.inelastic.phonons.AtomsEnsemble property) TransformFromFunc (class in abtem.transform) transition_potential_multislice() (abtem.waves.Waves method) transition_potential_multislice_and_detect() (in module abtem.multislice) transition_potential_scan() (abtem.prism.s_matrix.SMatrix method) (abtem.waves.Probe method) transition_quantum_numbers (abtem.inelastic.core_loss.TransitionPotential property) TransitionPotential (class in abtem.inelastic.core_loss) TransitionPotentialArray (class in abtem.inelastic.core_loss) transitions (abtem.inelastic.core_loss.TransitionPotential property) transmission_function() (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) TransmissionFunction (class in abtem.potentials.iam) transmit() (abtem.potentials.iam.PotentialArray method) (abtem.potentials.iam.TransmissionFunction method) transpose (abtem.multislice.FourierMultislice attribute) tuple_range() (in module abtem.core.utils) tuple_range_except() (in module abtem.distributions)

U

u (abtem.prism.s_matrix.CompressedSMatrixArray property) U (in module abtem.core.fft) (in module abtem.core.grid) uniform() (in module abtem.distributions) unit_vector_from_angles() (in module abtem.magnetism.iam) units (abtem.core.axes.AxisAlignedTiltAxis attribute) (abtem.core.axes.AxisMetadata attribute) (abtem.core.axes.EnergyAxis attribute) (abtem.core.axes.EnergyLossAxis attribute) (abtem.core.axes.LinearAxis attribute) (abtem.core.axes.NonLinearAxis attribute) (abtem.core.axes.PositionsAxis attribute) (abtem.core.axes.RealSpaceAxis attribute) (abtem.core.axes.ReciprocalSpaceAxis attribute) (abtem.core.axes.ScaleAxis attribute) (abtem.core.axes.ThicknessAxis attribute) (abtem.core.axes.TiltAxis attribute) (abtem.core.axes.WaveVectorAxis attribute) (abtem.inelastic.plasmons.PlasmonAxis attribute)

units_type (in module abtem.core.units) UnknownAxis (class in abtem.core.axes) unpack_blockwise_args() (in module abtem.core.ensemble) update() (abtem.inelastic.plasmons.PlasmonAxis method) update_data_indices() (abtem.visualize.visualizations.Visualization method) update_defaults() (in module abtem.core.config) update_if_exists() (abtem.core.diagnostics.TqdmWrapper method) upsample (abtem.prism.s_matrix.SMatrix property) url (abtem.detectors.BaseDetector property) use_degrees (abtem.bloch.dynamical.BlochwaveEnsemble property) use_wave_eq (abtem.bloch.dynamical.BlochwaveEnsemble property) (abtem.bloch.dynamical.BlochWaves property)

V

vacuum_permeability (in module abtem.magnetism.utils) validate_axis_metadata() (in module abtem.array) validate_cell() (in module abtem.bloch.indexing) validate_chunks() (in module abtem.core.chunks) validate_cmap() (in module abtem.visualize.artists) validate_coordinate() (in module abtem.scan) validate_detectors() (in module abtem.detectors) validate_device() (in module abtem.core.backend) validate_distribution() (in module abtem.distributions) validate_energy() (in module abtem.waves) validate_g_max() (in module abtem.bloch.dynamical) validate_gpts() (in module abtem.core.grid) validate_lazy() (in module abtem.array) validate_parameters() (in module abtem.parametrizations) validate_parametrization() (in module abtem.parametrizations) validate_per_atom_property() (in module abtem.atoms) validate_potential() (in module abtem.potentials.iam) validate_rotations() (in module abtem.bloch.dynamical) validate_scan() (in module abtem.scan) validate_seeds() (in module abtem.inelastic.phonons) validate_sigmas() (in module abtem.atoms) (in module abtem.parametrizations)

validate_sites() (abtem.inelastic.core_loss.TransitionPotentialArray method) validate_tilt() (in module abtem.tilt) validate_units() (in module abtem.core.units) ValidatedChunks (in module abtem.core.chunks) values (abtem.core.axes.OrdinalAxis attribute) (abtem.core.axes.SpinAxis attribute) (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) (abtem.integrals.ProjectionIntegralTable property) vector_potential (abtem.magnetism.gpaw.GPAWMagneticFields attribute) vector_potential_3d() (in module abtem.magnetism.iam) VectorPotential (class in abtem.magnetism.iam) VectorPotentialArray (class in abtem.magnetism.iam) vh_dense (abtem.prism.s_matrix.CompressedSMatrixArray property) Visualization (class in abtem.visualize.visualizations) voigtian() (in module abtem.distributions) voigtian_source_size() (abtem.measurements.DiffractionPatterns method) (abtem.measurements.PolarMeasurements method) Vortex (class in abtem.transfer)

W

warn_if_slow_gpu_fft() (in module abtem.core.fft) wave_vectors (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) wavelength (abtem.bloch.dynamical.BlochWaves property) (abtem.core.energy.Accelerator property) (abtem.core.energy.HasAcceleratorMixin property) (abtem.waves.Waves property) waves (abtem.prism.s_matrix.SMatrixArray property) Waves (class in abtem.waves) WavesBuilder (class in abtem.waves) WavesDetector (class in abtem.detectors) WavesToMeasurementTransform (class in abtem.transform) WavesToWavesTransform (class in abtem.transform) WavesTransform (class in abtem.transform) WavesType (in module abtem.transform) WaveVectorAxis (class in abtem.core.axes) weights (abtem.distributions.BaseDistribution property) (abtem.distributions.DistributionFromValues property) (abtem.distributions.MultidimensionalDistribution property) (abtem.inelastic.plasmons.PlasmonScatteringEvents property)

width (abtem.detectors.SpectralSlitDetector property) (abtem.parametrizations.EwaldParametrization property) wiener_snr (abtem.transfer.CTF property) window_extent (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) window_gpts (abtem.prism.s_matrix.BaseSMatrix property) (abtem.prism.s_matrix.CompressedSMatrixArray property) (abtem.prism.s_matrix.SMatrix property) (abtem.prism.s_matrix.SMatrixArray property) window_offset (abtem.prism.s_matrix.SMatrixArray property) wrap_with_tolerance() (in module abtem.atoms) wrapped_crop_2d() (in module abtem.prism.utils) wrapped_is_close() (in module abtem.bloch.utils) wrapped_slices() (in module abtem.prism.utils)

X

x_ray_scattering_factor() (abtem.parametrizations.Parametrization method) (abtem.potentials.gpaw.GPAWParametrization method) (in module abtem.parametrizations.functions.lobato)

xc (abtem.inelastic.core_loss.SubshellTransitions property) xr (in module abtem.array) (in module abtem.measurements)

Z

Z (abtem.inelastic.core_loss.BaseTransitionCollection property) (abtem.inelastic.core_loss.BaseTransitionPotential property) (abtem.inelastic.core_loss.TransitionPotential property)

Zernike (class in abtem.transfer)